Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09420 and PGA1_c09430 are separated by 0 nucleotides PGA1_c09430 and PGA1_c09440 are separated by 584 nucleotides
PGA1_c09420: PGA1_c09420 - pyruvate carboxylase Pyc, at 959,426 to 962,992
_c09420
PGA1_c09430: PGA1_c09430 - l-lactate dehydrogenase IldD, at 962,993 to 964,198
_c09430
PGA1_c09440: PGA1_c09440 - diguanylate cyclase (GGDEF) domain-containing protein, at 964,783 to 966,579
_c09440
Position (kb) 962
963
964
965 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 962.115 kb on + strand, within PGA1_c09420 at 962.115 kb on - strand, within PGA1_c09420 at 962.127 kb on - strand, within PGA1_c09420 at 962.144 kb on - strand, within PGA1_c09420 at 962.167 kb on - strand, within PGA1_c09420 at 962.167 kb on - strand, within PGA1_c09420 at 962.172 kb on - strand, within PGA1_c09420 at 962.174 kb on - strand, within PGA1_c09420 at 962.182 kb on - strand, within PGA1_c09420 at 962.267 kb on + strand, within PGA1_c09420 at 962.267 kb on + strand, within PGA1_c09420 at 962.367 kb on + strand, within PGA1_c09420 at 962.444 kb on + strand, within PGA1_c09420 at 962.540 kb on - strand, within PGA1_c09420 at 962.616 kb on - strand, within PGA1_c09420 at 962.616 kb on - strand, within PGA1_c09420 at 962.616 kb on - strand, within PGA1_c09420 at 962.629 kb on + strand, within PGA1_c09420 at 962.693 kb on + strand at 962.743 kb on + strand at 962.743 kb on + strand at 962.780 kb on + strand at 962.872 kb on + strand at 962.945 kb on - strand at 962.956 kb on + strand at 963.057 kb on + strand at 963.074 kb on - strand at 963.202 kb on + strand, within PGA1_c09430 at 963.202 kb on + strand, within PGA1_c09430 at 963.202 kb on + strand, within PGA1_c09430 at 963.202 kb on + strand, within PGA1_c09430 at 963.210 kb on - strand, within PGA1_c09430 at 963.223 kb on + strand, within PGA1_c09430 at 963.326 kb on - strand, within PGA1_c09430 at 963.341 kb on - strand, within PGA1_c09430 at 963.381 kb on - strand, within PGA1_c09430 at 963.416 kb on + strand, within PGA1_c09430 at 963.458 kb on + strand, within PGA1_c09430 at 963.477 kb on - strand, within PGA1_c09430 at 963.481 kb on + strand, within PGA1_c09430 at 963.486 kb on - strand, within PGA1_c09430 at 963.527 kb on + strand, within PGA1_c09430 at 963.527 kb on + strand, within PGA1_c09430 at 963.527 kb on + strand, within PGA1_c09430 at 963.535 kb on - strand, within PGA1_c09430 at 963.569 kb on - strand, within PGA1_c09430 at 963.585 kb on - strand, within PGA1_c09430 at 963.595 kb on + strand, within PGA1_c09430 at 963.605 kb on + strand, within PGA1_c09430 at 963.608 kb on - strand, within PGA1_c09430 at 963.674 kb on + strand, within PGA1_c09430 at 963.706 kb on + strand, within PGA1_c09430 at 963.714 kb on - strand, within PGA1_c09430 at 963.872 kb on + strand, within PGA1_c09430 at 963.875 kb on - strand, within PGA1_c09430 at 963.886 kb on + strand, within PGA1_c09430 at 963.894 kb on - strand, within PGA1_c09430 at 963.915 kb on - strand, within PGA1_c09430 at 963.963 kb on - strand, within PGA1_c09430 at 964.000 kb on + strand, within PGA1_c09430 at 964.000 kb on + strand, within PGA1_c09430 at 964.003 kb on - strand, within PGA1_c09430 at 964.003 kb on - strand, within PGA1_c09430 at 964.003 kb on - strand, within PGA1_c09430 at 964.003 kb on - strand, within PGA1_c09430 at 964.041 kb on - strand, within PGA1_c09430 at 964.167 kb on + strand at 964.167 kb on + strand at 964.167 kb on + strand at 964.178 kb on + strand at 964.221 kb on + strand at 964.221 kb on + strand at 964.241 kb on - strand at 964.270 kb on + strand at 964.278 kb on - strand at 964.303 kb on + strand at 964.303 kb on + strand at 964.311 kb on - strand at 964.311 kb on - strand at 964.392 kb on + strand at 964.402 kb on + strand at 964.410 kb on - strand at 964.415 kb on - strand at 964.415 kb on - strand at 964.430 kb on + strand at 964.438 kb on - strand at 964.450 kb on + strand at 964.452 kb on + strand at 964.458 kb on - strand at 964.458 kb on - strand at 964.463 kb on + strand at 964.470 kb on - strand at 964.476 kb on - strand at 964.478 kb on + strand at 964.486 kb on - strand at 964.491 kb on + strand at 964.499 kb on - strand at 964.505 kb on - strand at 964.512 kb on + strand at 964.525 kb on - strand at 964.526 kb on - strand at 964.546 kb on - strand at 964.555 kb on + strand at 964.555 kb on + strand at 964.563 kb on + strand at 964.563 kb on - strand at 964.563 kb on - strand at 964.563 kb on - strand at 964.568 kb on + strand at 964.571 kb on - strand at 964.571 kb on - strand at 964.588 kb on + strand at 964.626 kb on + strand at 964.685 kb on - strand at 964.713 kb on - strand at 964.744 kb on - strand at 964.760 kb on + strand at 964.767 kb on + strand at 964.808 kb on + strand at 964.808 kb on + strand at 964.816 kb on - strand at 964.816 kb on - strand at 964.823 kb on + strand at 964.890 kb on - strand at 964.920 kb on - strand at 964.968 kb on + strand, within PGA1_c09440 at 964.968 kb on + strand, within PGA1_c09440 at 964.980 kb on + strand, within PGA1_c09440 at 964.988 kb on - strand, within PGA1_c09440 at 964.988 kb on - strand, within PGA1_c09440 at 964.988 kb on - strand, within PGA1_c09440 at 964.988 kb on - strand, within PGA1_c09440 at 965.030 kb on + strand, within PGA1_c09440 at 965.031 kb on - strand, within PGA1_c09440 at 965.031 kb on - strand, within PGA1_c09440 at 965.053 kb on - strand, within PGA1_c09440 at 965.053 kb on - strand, within PGA1_c09440 at 965.063 kb on + strand, within PGA1_c09440 at 965.071 kb on - strand, within PGA1_c09440 at 965.079 kb on + strand, within PGA1_c09440 at 965.156 kb on + strand, within PGA1_c09440 at 965.174 kb on - strand, within PGA1_c09440 at 965.180 kb on + strand, within PGA1_c09440
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 962,115 + PGA1_c09420 0.75 -1.6 962,115 - PGA1_c09420 0.75 -1.4 962,127 - PGA1_c09420 0.76 -2.9 962,144 - PGA1_c09420 0.76 -2.7 962,167 - PGA1_c09420 0.77 -0.4 962,167 - PGA1_c09420 0.77 -4.1 962,172 - PGA1_c09420 0.77 -3.5 962,174 - PGA1_c09420 0.77 -2.9 962,182 - PGA1_c09420 0.77 -2.4 962,267 + PGA1_c09420 0.80 -0.6 962,267 + PGA1_c09420 0.80 -2.9 962,367 + PGA1_c09420 0.82 -2.9 962,444 + PGA1_c09420 0.85 -0.9 962,540 - PGA1_c09420 0.87 -2.0 962,616 - PGA1_c09420 0.89 -2.0 962,616 - PGA1_c09420 0.89 -2.1 962,616 - PGA1_c09420 0.89 -2.7 962,629 + PGA1_c09420 0.90 -3.2 962,693 + -0.6 962,743 + -1.1 962,743 + -3.1 962,780 + -2.5 962,872 + -3.5 962,945 - -3.1 962,956 + -1.9 963,057 + -0.7 963,074 - -1.1 963,202 + PGA1_c09430 0.17 +0.4 963,202 + PGA1_c09430 0.17 +0.4 963,202 + PGA1_c09430 0.17 -2.1 963,202 + PGA1_c09430 0.17 -2.0 963,210 - PGA1_c09430 0.18 -2.8 963,223 + PGA1_c09430 0.19 -2.3 963,326 - PGA1_c09430 0.28 -1.7 963,341 - PGA1_c09430 0.29 -1.6 963,381 - PGA1_c09430 0.32 -1.6 963,416 + PGA1_c09430 0.35 -2.0 963,458 + PGA1_c09430 0.39 -1.1 963,477 - PGA1_c09430 0.40 -0.6 963,481 + PGA1_c09430 0.40 -1.4 963,486 - PGA1_c09430 0.41 -1.6 963,527 + PGA1_c09430 0.44 -2.1 963,527 + PGA1_c09430 0.44 -2.1 963,527 + PGA1_c09430 0.44 -1.1 963,535 - PGA1_c09430 0.45 -2.3 963,569 - PGA1_c09430 0.48 -1.7 963,585 - PGA1_c09430 0.49 +2.9 963,595 + PGA1_c09430 0.50 -3.8 963,605 + PGA1_c09430 0.51 -0.7 963,608 - PGA1_c09430 0.51 -2.4 963,674 + PGA1_c09430 0.56 -2.9 963,706 + PGA1_c09430 0.59 -1.0 963,714 - PGA1_c09430 0.60 -2.6 963,872 + PGA1_c09430 0.73 -0.6 963,875 - PGA1_c09430 0.73 -0.1 963,886 + PGA1_c09430 0.74 -2.7 963,894 - PGA1_c09430 0.75 -0.9 963,915 - PGA1_c09430 0.76 -0.9 963,963 - PGA1_c09430 0.80 -2.5 964,000 + PGA1_c09430 0.83 -1.9 964,000 + PGA1_c09430 0.83 -0.6 964,003 - PGA1_c09430 0.84 +0.4 964,003 - PGA1_c09430 0.84 -4.1 964,003 - PGA1_c09430 0.84 -1.7 964,003 - PGA1_c09430 0.84 -3.9 964,041 - PGA1_c09430 0.87 -3.8 964,167 + +0.3 964,167 + +0.0 964,167 + -1.4 964,178 + -0.1 964,221 + -0.1 964,221 + -1.4 964,241 - -0.3 964,270 + +0.4 964,278 - -2.1 964,303 + +1.7 964,303 + +1.6 964,311 - -0.2 964,311 - +0.4 964,392 + -0.6 964,402 + +1.7 964,410 - -1.1 964,415 - +1.4 964,415 - +1.2 964,430 + +0.4 964,438 - +0.4 964,450 + -0.6 964,452 + -0.4 964,458 - -2.5 964,458 - -1.3 964,463 + +2.9 964,470 - +1.6 964,476 - -2.0 964,478 + +1.5 964,486 - +0.0 964,491 + +0.7 964,499 - +0.3 964,505 - -2.3 964,512 + +0.9 964,525 - -2.0 964,526 - -1.9 964,546 - -1.6 964,555 + +0.7 964,555 + +0.7 964,563 + -0.1 964,563 - -0.4 964,563 - +1.3 964,563 - -3.4 964,568 + +1.4 964,571 - +1.1 964,571 - +2.1 964,588 + -3.0 964,626 + +1.1 964,685 - +0.6 964,713 - +0.9 964,744 - -0.2 964,760 + -1.2 964,767 + -0.9 964,808 + -2.6 964,808 + -2.1 964,816 - +0.2 964,816 - +0.9 964,823 + +0.2 964,890 - -1.6 964,920 - -0.9 964,968 + PGA1_c09440 0.10 -2.4 964,968 + PGA1_c09440 0.10 -2.3 964,980 + PGA1_c09440 0.11 -0.6 964,988 - PGA1_c09440 0.11 +1.2 964,988 - PGA1_c09440 0.11 -0.1 964,988 - PGA1_c09440 0.11 -0.1 964,988 - PGA1_c09440 0.11 -1.7 965,030 + PGA1_c09440 0.14 -1.6 965,031 - PGA1_c09440 0.14 -0.1 965,031 - PGA1_c09440 0.14 -0.1 965,053 - PGA1_c09440 0.15 -2.3 965,053 - PGA1_c09440 0.15 -0.6 965,063 + PGA1_c09440 0.16 +1.5 965,071 - PGA1_c09440 0.16 -0.9 965,079 + PGA1_c09440 0.16 +2.4 965,156 + PGA1_c09440 0.21 -2.1 965,174 - PGA1_c09440 0.22 -0.9 965,180 + PGA1_c09440 0.22 -0.8
Or see this region's nucleotide sequence