Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0750

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0749 and Psest_0750 are separated by 108 nucleotidesPsest_0750 and Psest_0751 are separated by 22 nucleotides Psest_0749: Psest_0749 - Transcriptional regulator, at 820,936 to 821,646 _0749 Psest_0750: Psest_0750 - hypothetical protein, at 821,755 to 822,129 _0750 Psest_0751: Psest_0751 - Arabinose efflux permease, at 822,152 to 823,333 _0751 Position (kb) 821 822 823Strain fitness (log2 ratio) -2 -1 0 1 2 3at 820.780 kb on + strandat 820.900 kb on - strandat 820.905 kb on - strandat 821.049 kb on + strand, within Psest_0749at 821.050 kb on - strand, within Psest_0749at 821.176 kb on + strand, within Psest_0749at 821.177 kb on - strand, within Psest_0749at 821.177 kb on - strand, within Psest_0749at 821.177 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.180 kb on - strand, within Psest_0749at 821.203 kb on + strand, within Psest_0749at 821.203 kb on + strand, within Psest_0749at 821.203 kb on + strand, within Psest_0749at 821.203 kb on + strand, within Psest_0749at 821.204 kb on - strand, within Psest_0749at 821.296 kb on + strand, within Psest_0749at 821.525 kb on - strand, within Psest_0749at 821.700 kb on - strandat 821.755 kb on - strandat 821.784 kb on + strandat 821.784 kb on + strandat 821.784 kb on + strandat 821.784 kb on + strandat 821.785 kb on - strandat 821.812 kb on + strand, within Psest_0750at 821.812 kb on + strand, within Psest_0750at 821.812 kb on + strand, within Psest_0750at 821.812 kb on + strand, within Psest_0750at 821.812 kb on + strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.813 kb on - strand, within Psest_0750at 821.833 kb on + strand, within Psest_0750at 821.833 kb on + strand, within Psest_0750at 822.407 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.828 kb on + strand, within Psest_0751at 822.829 kb on - strand, within Psest_0751at 822.829 kb on - strand, within Psest_0751at 822.829 kb on - strand, within Psest_0751at 822.829 kb on - strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.981 kb on + strand, within Psest_0751at 822.982 kb on - strand, within Psest_0751

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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820,780 + +1.4
820,900 - -2.2
820,905 - -0.2
821,049 + Psest_0749 0.16 -0.2
821,050 - Psest_0749 0.16 +1.0
821,176 + Psest_0749 0.34 +0.1
821,177 - Psest_0749 0.34 +0.3
821,177 - Psest_0749 0.34 +0.5
821,177 - Psest_0749 0.34 +0.2
821,180 - Psest_0749 0.34 -0.6
821,180 - Psest_0749 0.34 +1.5
821,180 - Psest_0749 0.34 +0.4
821,180 - Psest_0749 0.34 -0.1
821,180 - Psest_0749 0.34 +1.4
821,203 + Psest_0749 0.38 +1.1
821,203 + Psest_0749 0.38 -0.6
821,203 + Psest_0749 0.38 +0.2
821,203 + Psest_0749 0.38 +0.3
821,204 - Psest_0749 0.38 -1.9
821,296 + Psest_0749 0.51 +0.1
821,525 - Psest_0749 0.83 +1.1
821,700 - +0.3
821,755 - +0.7
821,784 + +2.1
821,784 + +1.4
821,784 + -1.0
821,784 + +2.1
821,785 - -0.2
821,812 + Psest_0750 0.15 +0.4
821,812 + Psest_0750 0.15 -0.9
821,812 + Psest_0750 0.15 -0.6
821,812 + Psest_0750 0.15 -0.0
821,812 + Psest_0750 0.15 -0.9
821,813 - Psest_0750 0.15 -0.0
821,813 - Psest_0750 0.15 -0.9
821,813 - Psest_0750 0.15 -1.5
821,813 - Psest_0750 0.15 -1.1
821,813 - Psest_0750 0.15 -0.5
821,833 + Psest_0750 0.21 -1.5
821,833 + Psest_0750 0.21 +0.8
822,407 + Psest_0751 0.22 +1.7
822,828 + Psest_0751 0.57 +0.7
822,828 + Psest_0751 0.57 +1.5
822,828 + Psest_0751 0.57 +0.1
822,828 + Psest_0751 0.57 -1.5
822,828 + Psest_0751 0.57 +0.1
822,828 + Psest_0751 0.57 +2.1
822,828 + Psest_0751 0.57 +1.1
822,828 + Psest_0751 0.57 +0.9
822,829 - Psest_0751 0.57 +0.1
822,829 - Psest_0751 0.57 +0.1
822,829 - Psest_0751 0.57 +1.1
822,829 - Psest_0751 0.57 -0.5
822,981 + Psest_0751 0.70 +0.7
822,981 + Psest_0751 0.70 +0.4
822,981 + Psest_0751 0.70 +3.7
822,981 + Psest_0751 0.70 +1.1
822,981 + Psest_0751 0.70 +0.1
822,981 + Psest_0751 0.70 +1.3
822,981 + Psest_0751 0.70 +1.4
822,982 - Psest_0751 0.70 -0.5

Or see this region's nucleotide sequence