Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07380 and PGA1_c07390 overlap by 4 nucleotides PGA1_c07390 and PGA1_c07400 overlap by 4 nucleotides PGA1_c07400 and PGA1_c07410 overlap by 1 nucleotides
PGA1_c07380: PGA1_c07380 - dihydroxy-acid dehydratase IlvD, at 759,875 to 761,590
_c07380
PGA1_c07390: PGA1_c07390 - alpha-galactosidase RafA, at 761,587 to 763,686
_c07390
PGA1_c07400: PGA1_c07400 - binding protein dependent transport system permease, at 763,683 to 764,531
_c07400
PGA1_c07410: PGA1_c07410 - binding protein dependent transport system permease, at 764,531 to 765,478
_c07410
Position (kb) 761
762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 760.589 kb on - strand, within PGA1_c07380 at 760.648 kb on - strand, within PGA1_c07380 at 760.716 kb on - strand, within PGA1_c07380 at 760.716 kb on - strand, within PGA1_c07380 at 760.737 kb on - strand, within PGA1_c07380 at 760.792 kb on + strand, within PGA1_c07380 at 760.832 kb on + strand, within PGA1_c07380 at 760.848 kb on - strand, within PGA1_c07380 at 760.916 kb on + strand, within PGA1_c07380 at 760.916 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.123 kb on + strand, within PGA1_c07380 at 761.123 kb on - strand, within PGA1_c07380 at 761.142 kb on - strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.157 kb on - strand, within PGA1_c07380 at 761.163 kb on - strand, within PGA1_c07380 at 761.199 kb on + strand, within PGA1_c07380 at 761.199 kb on + strand, within PGA1_c07380 at 761.204 kb on - strand, within PGA1_c07380 at 761.207 kb on - strand, within PGA1_c07380 at 761.212 kb on - strand, within PGA1_c07380 at 761.245 kb on - strand, within PGA1_c07380 at 761.250 kb on - strand, within PGA1_c07380 at 761.429 kb on + strand at 761.443 kb on + strand at 761.456 kb on - strand at 761.530 kb on + strand at 761.593 kb on - strand at 761.593 kb on - strand at 761.629 kb on + strand at 761.630 kb on + strand at 761.635 kb on + strand at 761.637 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.718 kb on + strand at 761.760 kb on + strand at 761.800 kb on - strand, within PGA1_c07390 at 761.834 kb on - strand, within PGA1_c07390 at 761.849 kb on + strand, within PGA1_c07390 at 761.857 kb on - strand, within PGA1_c07390 at 761.905 kb on - strand, within PGA1_c07390 at 761.953 kb on - strand, within PGA1_c07390 at 761.955 kb on + strand, within PGA1_c07390 at 762.033 kb on - strand, within PGA1_c07390 at 762.046 kb on - strand, within PGA1_c07390 at 762.069 kb on + strand, within PGA1_c07390 at 762.077 kb on - strand, within PGA1_c07390 at 762.168 kb on + strand, within PGA1_c07390 at 762.271 kb on - strand, within PGA1_c07390 at 762.292 kb on - strand, within PGA1_c07390 at 762.313 kb on - strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.330 kb on - strand, within PGA1_c07390 at 762.364 kb on + strand, within PGA1_c07390 at 762.372 kb on - strand, within PGA1_c07390 at 762.389 kb on + strand, within PGA1_c07390 at 762.397 kb on - strand, within PGA1_c07390 at 762.407 kb on + strand, within PGA1_c07390 at 762.412 kb on + strand, within PGA1_c07390 at 762.420 kb on - strand, within PGA1_c07390 at 762.457 kb on + strand, within PGA1_c07390 at 762.457 kb on + strand, within PGA1_c07390 at 762.458 kb on + strand, within PGA1_c07390 at 762.463 kb on + strand, within PGA1_c07390 at 762.466 kb on - strand, within PGA1_c07390 at 762.471 kb on - strand, within PGA1_c07390 at 762.486 kb on - strand, within PGA1_c07390 at 762.494 kb on + strand, within PGA1_c07390 at 762.526 kb on + strand, within PGA1_c07390 at 762.537 kb on + strand, within PGA1_c07390 at 762.545 kb on - strand, within PGA1_c07390 at 762.545 kb on - strand, within PGA1_c07390 at 762.577 kb on - strand, within PGA1_c07390 at 762.586 kb on - strand, within PGA1_c07390 at 762.648 kb on - strand, within PGA1_c07390 at 762.662 kb on - strand, within PGA1_c07390 at 762.692 kb on - strand, within PGA1_c07390 at 762.693 kb on + strand, within PGA1_c07390 at 762.739 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.895 kb on - strand, within PGA1_c07390 at 762.895 kb on - strand, within PGA1_c07390 at 762.895 kb on - strand, within PGA1_c07390 at 762.900 kb on - strand, within PGA1_c07390 at 763.009 kb on - strand, within PGA1_c07390 at 763.026 kb on - strand, within PGA1_c07390 at 763.043 kb on - strand, within PGA1_c07390 at 763.045 kb on + strand, within PGA1_c07390 at 763.069 kb on + strand, within PGA1_c07390 at 763.112 kb on - strand, within PGA1_c07390 at 763.135 kb on + strand, within PGA1_c07390 at 763.143 kb on - strand, within PGA1_c07390 at 763.143 kb on - strand, within PGA1_c07390 at 763.204 kb on + strand, within PGA1_c07390 at 763.204 kb on + strand, within PGA1_c07390 at 763.204 kb on + strand, within PGA1_c07390 at 763.204 kb on + strand, within PGA1_c07390 at 763.212 kb on - strand, within PGA1_c07390 at 763.212 kb on - strand, within PGA1_c07390 at 763.212 kb on - strand, within PGA1_c07390 at 763.239 kb on + strand, within PGA1_c07390 at 763.265 kb on - strand, within PGA1_c07390 at 763.285 kb on + strand, within PGA1_c07390 at 763.293 kb on - strand, within PGA1_c07390 at 763.293 kb on - strand, within PGA1_c07390 at 763.293 kb on - strand, within PGA1_c07390 at 763.359 kb on + strand, within PGA1_c07390 at 763.360 kb on + strand, within PGA1_c07390 at 763.367 kb on - strand, within PGA1_c07390 at 763.374 kb on - strand, within PGA1_c07390 at 763.379 kb on - strand, within PGA1_c07390 at 763.413 kb on - strand, within PGA1_c07390 at 763.519 kb on + strand at 763.694 kb on - strand at 763.704 kb on - strand at 763.782 kb on + strand, within PGA1_c07400 at 763.782 kb on + strand, within PGA1_c07400 at 763.782 kb on + strand, within PGA1_c07400 at 763.806 kb on - strand, within PGA1_c07400 at 763.829 kb on - strand, within PGA1_c07400 at 763.845 kb on + strand, within PGA1_c07400 at 763.941 kb on - strand, within PGA1_c07400 at 763.944 kb on + strand, within PGA1_c07400 at 763.952 kb on - strand, within PGA1_c07400 at 763.957 kb on + strand, within PGA1_c07400 at 763.992 kb on - strand, within PGA1_c07400 at 763.999 kb on + strand, within PGA1_c07400 at 764.046 kb on - strand, within PGA1_c07400 at 764.048 kb on - strand, within PGA1_c07400 at 764.084 kb on + strand, within PGA1_c07400 at 764.084 kb on + strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.242 kb on + strand, within PGA1_c07400 at 764.242 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.250 kb on - strand, within PGA1_c07400 at 764.252 kb on + strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.283 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.291 kb on - strand, within PGA1_c07400 at 764.293 kb on + strand, within PGA1_c07400 at 764.296 kb on - strand, within PGA1_c07400 at 764.296 kb on - strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.362 kb on - strand, within PGA1_c07400 at 764.365 kb on - strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.382 kb on + strand, within PGA1_c07400 at 764.382 kb on - strand, within PGA1_c07400 at 764.389 kb on - strand, within PGA1_c07400 at 764.474 kb on + strand at 764.477 kb on + strand at 764.493 kb on - strand at 764.508 kb on + strand at 764.508 kb on + strand at 764.516 kb on - strand at 764.537 kb on - strand at 764.549 kb on - strand at 764.580 kb on + strand at 764.608 kb on - strand at 764.624 kb on + strand at 764.630 kb on + strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 760,589 - PGA1_c07380 0.42 -2.4 760,648 - PGA1_c07380 0.45 -2.0 760,716 - PGA1_c07380 0.49 +0.2 760,716 - PGA1_c07380 0.49 -3.1 760,737 - PGA1_c07380 0.50 -0.8 760,792 + PGA1_c07380 0.53 +0.5 760,832 + PGA1_c07380 0.56 -0.9 760,848 - PGA1_c07380 0.57 -3.0 760,916 + PGA1_c07380 0.61 +0.1 760,916 + PGA1_c07380 0.61 +1.7 761,027 + PGA1_c07380 0.67 +1.0 761,027 + PGA1_c07380 0.67 -0.2 761,027 + PGA1_c07380 0.67 +1.5 761,123 + PGA1_c07380 0.73 +1.3 761,123 - PGA1_c07380 0.73 -2.0 761,142 - PGA1_c07380 0.74 -0.3 761,155 + PGA1_c07380 0.75 -1.7 761,155 + PGA1_c07380 0.75 -0.9 761,155 + PGA1_c07380 0.75 -2.5 761,157 - PGA1_c07380 0.75 -1.5 761,163 - PGA1_c07380 0.75 -0.2 761,199 + PGA1_c07380 0.77 -0.0 761,199 + PGA1_c07380 0.77 -0.6 761,204 - PGA1_c07380 0.77 -0.1 761,207 - PGA1_c07380 0.78 -1.3 761,212 - PGA1_c07380 0.78 +1.0 761,245 - PGA1_c07380 0.80 -0.1 761,250 - PGA1_c07380 0.80 -1.1 761,429 + -0.7 761,443 + +0.0 761,456 - -0.2 761,530 + +0.6 761,593 - +1.3 761,593 - -0.2 761,629 + +2.5 761,630 + +1.0 761,635 + -0.1 761,637 - -0.2 761,638 - +0.7 761,638 - +0.9 761,638 - +0.3 761,638 - +1.9 761,718 + +1.6 761,760 + -0.9 761,800 - PGA1_c07390 0.10 -2.0 761,834 - PGA1_c07390 0.12 +0.1 761,849 + PGA1_c07390 0.12 +1.3 761,857 - PGA1_c07390 0.13 -1.7 761,905 - PGA1_c07390 0.15 -1.5 761,953 - PGA1_c07390 0.17 -3.4 761,955 + PGA1_c07390 0.18 +0.2 762,033 - PGA1_c07390 0.21 +0.6 762,046 - PGA1_c07390 0.22 +0.5 762,069 + PGA1_c07390 0.23 +1.7 762,077 - PGA1_c07390 0.23 -0.1 762,168 + PGA1_c07390 0.28 -1.7 762,271 - PGA1_c07390 0.33 -0.4 762,292 - PGA1_c07390 0.34 -1.9 762,313 - PGA1_c07390 0.35 -2.9 762,322 + PGA1_c07390 0.35 -1.8 762,322 + PGA1_c07390 0.35 -0.6 762,322 + PGA1_c07390 0.35 +0.5 762,330 - PGA1_c07390 0.35 -2.6 762,364 + PGA1_c07390 0.37 -0.9 762,372 - PGA1_c07390 0.37 +1.0 762,389 + PGA1_c07390 0.38 +2.4 762,397 - PGA1_c07390 0.39 +4.0 762,407 + PGA1_c07390 0.39 -0.2 762,412 + PGA1_c07390 0.39 -2.4 762,420 - PGA1_c07390 0.40 +0.3 762,457 + PGA1_c07390 0.41 +0.3 762,457 + PGA1_c07390 0.41 +1.5 762,458 + PGA1_c07390 0.41 -2.0 762,463 + PGA1_c07390 0.42 +2.7 762,466 - PGA1_c07390 0.42 +0.1 762,471 - PGA1_c07390 0.42 +0.8 762,486 - PGA1_c07390 0.43 +0.1 762,494 + PGA1_c07390 0.43 +0.6 762,526 + PGA1_c07390 0.45 -2.1 762,537 + PGA1_c07390 0.45 +0.5 762,545 - PGA1_c07390 0.46 -0.0 762,545 - PGA1_c07390 0.46 +0.3 762,577 - PGA1_c07390 0.47 +0.9 762,586 - PGA1_c07390 0.48 +0.3 762,648 - PGA1_c07390 0.51 -1.3 762,662 - PGA1_c07390 0.51 +1.9 762,692 - PGA1_c07390 0.53 +1.1 762,693 + PGA1_c07390 0.53 -0.2 762,739 + PGA1_c07390 0.55 +2.1 762,803 + PGA1_c07390 0.58 +0.8 762,803 + PGA1_c07390 0.58 -1.1 762,803 + PGA1_c07390 0.58 +0.1 762,803 + PGA1_c07390 0.58 +0.5 762,803 + PGA1_c07390 0.58 -0.1 762,811 - PGA1_c07390 0.58 -1.7 762,811 - PGA1_c07390 0.58 -0.4 762,811 - PGA1_c07390 0.58 -0.2 762,811 - PGA1_c07390 0.58 +1.4 762,811 - PGA1_c07390 0.58 -0.9 762,811 - PGA1_c07390 0.58 -0.3 762,895 - PGA1_c07390 0.62 -1.8 762,895 - PGA1_c07390 0.62 +0.8 762,895 - PGA1_c07390 0.62 -3.0 762,900 - PGA1_c07390 0.63 +0.3 763,009 - PGA1_c07390 0.68 -1.5 763,026 - PGA1_c07390 0.69 +0.5 763,043 - PGA1_c07390 0.69 -0.3 763,045 + PGA1_c07390 0.69 +1.9 763,069 + PGA1_c07390 0.71 +0.5 763,112 - PGA1_c07390 0.73 -0.5 763,135 + PGA1_c07390 0.74 -0.9 763,143 - PGA1_c07390 0.74 -2.8 763,143 - PGA1_c07390 0.74 -1.9 763,204 + PGA1_c07390 0.77 -0.4 763,204 + PGA1_c07390 0.77 +1.0 763,204 + PGA1_c07390 0.77 +0.7 763,204 + PGA1_c07390 0.77 -0.3 763,212 - PGA1_c07390 0.77 +0.0 763,212 - PGA1_c07390 0.77 -1.1 763,212 - PGA1_c07390 0.77 +0.5 763,239 + PGA1_c07390 0.79 -1.5 763,265 - PGA1_c07390 0.80 +1.7 763,285 + PGA1_c07390 0.81 -1.3 763,293 - PGA1_c07390 0.81 +1.2 763,293 - PGA1_c07390 0.81 -0.1 763,293 - PGA1_c07390 0.81 -1.7 763,359 + PGA1_c07390 0.84 +1.9 763,360 + PGA1_c07390 0.84 -2.2 763,367 - PGA1_c07390 0.85 +0.5 763,374 - PGA1_c07390 0.85 +0.3 763,379 - PGA1_c07390 0.85 +0.1 763,413 - PGA1_c07390 0.87 -3.7 763,519 + -1.1 763,694 - -1.5 763,704 - -0.7 763,782 + PGA1_c07400 0.12 +1.5 763,782 + PGA1_c07400 0.12 -0.3 763,782 + PGA1_c07400 0.12 +0.9 763,806 - PGA1_c07400 0.14 +0.8 763,829 - PGA1_c07400 0.17 +1.0 763,845 + PGA1_c07400 0.19 +0.7 763,941 - PGA1_c07400 0.30 +2.2 763,944 + PGA1_c07400 0.31 -0.7 763,952 - PGA1_c07400 0.32 -0.7 763,957 + PGA1_c07400 0.32 +1.0 763,992 - PGA1_c07400 0.36 +1.9 763,999 + PGA1_c07400 0.37 -0.7 764,046 - PGA1_c07400 0.43 -1.3 764,048 - PGA1_c07400 0.43 +0.2 764,084 + PGA1_c07400 0.47 -0.4 764,084 + PGA1_c07400 0.47 -1.8 764,236 - PGA1_c07400 0.65 +0.4 764,236 - PGA1_c07400 0.65 +0.3 764,236 - PGA1_c07400 0.65 -1.5 764,242 + PGA1_c07400 0.66 +0.5 764,242 + PGA1_c07400 0.66 -0.2 764,247 + PGA1_c07400 0.66 -2.1 764,247 + PGA1_c07400 0.66 -2.6 764,247 + PGA1_c07400 0.66 +0.5 764,247 + PGA1_c07400 0.66 +0.6 764,247 + PGA1_c07400 0.66 -0.7 764,250 - PGA1_c07400 0.67 -2.3 764,252 + PGA1_c07400 0.67 -0.1 764,255 - PGA1_c07400 0.67 -0.2 764,255 - PGA1_c07400 0.67 +0.2 764,255 - PGA1_c07400 0.67 +2.5 764,283 + PGA1_c07400 0.71 -0.6 764,288 + PGA1_c07400 0.71 +2.3 764,288 + PGA1_c07400 0.71 -0.5 764,288 + PGA1_c07400 0.71 +0.7 764,288 + PGA1_c07400 0.71 -0.2 764,291 - PGA1_c07400 0.72 -3.0 764,293 + PGA1_c07400 0.72 +0.1 764,296 - PGA1_c07400 0.72 +0.2 764,296 - PGA1_c07400 0.72 -2.1 764,354 + PGA1_c07400 0.79 -0.1 764,354 + PGA1_c07400 0.79 +0.1 764,354 + PGA1_c07400 0.79 -1.1 764,354 + PGA1_c07400 0.79 -0.4 764,357 + PGA1_c07400 0.79 +1.1 764,357 + PGA1_c07400 0.79 -0.5 764,357 + PGA1_c07400 0.79 -0.1 764,362 - PGA1_c07400 0.80 +0.9 764,365 - PGA1_c07400 0.80 +1.0 764,372 + PGA1_c07400 0.81 -1.9 764,372 + PGA1_c07400 0.81 +1.2 764,372 + PGA1_c07400 0.81 -1.7 764,372 + PGA1_c07400 0.81 -0.4 764,372 + PGA1_c07400 0.81 +0.8 764,372 + PGA1_c07400 0.81 +1.0 764,372 + PGA1_c07400 0.81 +1.1 764,380 - PGA1_c07400 0.82 -2.4 764,380 - PGA1_c07400 0.82 +0.1 764,380 - PGA1_c07400 0.82 +1.7 764,380 - PGA1_c07400 0.82 +0.5 764,380 - PGA1_c07400 0.82 +0.5 764,380 - PGA1_c07400 0.82 +1.5 764,382 + PGA1_c07400 0.82 -2.3 764,382 - PGA1_c07400 0.82 -1.7 764,389 - PGA1_c07400 0.83 -1.5 764,474 + +0.8 764,477 + +0.6 764,493 - -0.7 764,508 + -1.7 764,508 + -1.5 764,516 - -0.1 764,537 - -0.5 764,549 - -2.0 764,580 + -0.1 764,608 - -3.6 764,624 + -3.3 764,630 + PGA1_c07410 0.10 +2.2 764,632 - PGA1_c07410 0.11 -0.8 764,632 - PGA1_c07410 0.11 -1.9
Or see this region's nucleotide sequence