Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06250 and PGA1_c06260 are separated by 122 nucleotides PGA1_c06260 and PGA1_c06270 are separated by 1 nucleotides PGA1_c06270 and PGA1_c06280 overlap by 1 nucleotides PGA1_c06280 and PGA1_c06290 are separated by 24 nucleotides
PGA1_c06250: PGA1_c06250 - cytochrome c oxidase subunit 2, at 641,067 to 641,906
_c06250
PGA1_c06260: PGA1_c06260 - protoheme IX farnesyltransferase CtaB, at 642,029 to 642,970
_c06260
PGA1_c06270: PGA1_c06270 - hypothetical protein, at 642,972 to 643,151
_c06270
PGA1_c06280: PGA1_c06280 - cytochrome c oxidase assembly protein CtaG, at 643,151 to 643,738
_c06280
PGA1_c06290: PGA1_c06290 - cytochrome c oxidase subunit 3, at 643,763 to 644,578
_c06290
Position (kb) 642
643 Strain fitness (log2 ratio) -2
-1
0
1 at 641.061 kb on - strand at 641.895 kb on + strand at 641.908 kb on - strand at 642.049 kb on + strand at 642.175 kb on + strand, within PGA1_c06260 at 642.708 kb on - strand, within PGA1_c06260 at 643.133 kb on + strand, within PGA1_c06270 at 643.140 kb on + strand at 643.352 kb on - strand, within PGA1_c06280 at 643.648 kb on + strand, within PGA1_c06280 at 643.656 kb on - strand, within PGA1_c06280
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 641,061 - +0.6 641,895 + -1.4 641,908 - -0.2 642,049 + -1.0 642,175 + PGA1_c06260 0.15 -2.4 642,708 - PGA1_c06260 0.72 -1.0 643,133 + PGA1_c06270 0.89 -1.6 643,140 + +0.0 643,352 - PGA1_c06280 0.34 -2.1 643,648 + PGA1_c06280 0.85 -1.7 643,656 - PGA1_c06280 0.86 -1.6
Or see this region's nucleotide sequence