Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0049 and Psest_0050 are separated by 155 nucleotides Psest_0050 and Psest_0051 are separated by 193 nucleotides Psest_0051 and Psest_0052 are separated by 10 nucleotides Psest_0052 and Psest_0053 are separated by 167 nucleotides Psest_0053 and Psest_0054 are separated by 86 nucleotides
Psest_0049: Psest_0049 - Uncharacterized conserved protein, at 52,951 to 53,556
_0049
Psest_0050: Psest_0050 - Predicted acetyltransferase, at 53,712 to 53,993
_0050
Psest_0051: Psest_0051 - hypothetical protein, at 54,187 to 54,516
_0051
Psest_0052: Psest_0052 - hypothetical protein, at 54,527 to 55,279
_0052
Psest_0053: Psest_0053 - hypothetical protein, at 55,447 to 55,950
_0053
Psest_0054: Psest_0054 - hypothetical protein, at 56,037 to 56,429
_0054
Position (kb) 54
55
56 Strain fitness (log2 ratio) -1
0
1
2
3 at 53.596 kb on - strand at 53.659 kb on + strand at 53.659 kb on + strand at 53.659 kb on + strand at 53.660 kb on - strand at 53.660 kb on - strand at 53.676 kb on + strand at 53.676 kb on + strand at 53.676 kb on + strand at 53.677 kb on - strand at 53.761 kb on - strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.946 kb on + strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.947 kb on - strand, within Psest_0050 at 53.999 kb on - strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.019 kb on + strand at 54.020 kb on - strand at 54.040 kb on + strand at 54.041 kb on - strand at 54.134 kb on - strand at 54.218 kb on + strand at 54.219 kb on - strand at 54.276 kb on + strand, within Psest_0051 at 54.276 kb on + strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.277 kb on - strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.433 kb on + strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.434 kb on - strand, within Psest_0051 at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.488 kb on + strand at 54.489 kb on - strand at 54.489 kb on - strand at 54.735 kb on + strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.736 kb on - strand, within Psest_0052 at 54.780 kb on + strand, within Psest_0052 at 54.803 kb on + strand, within Psest_0052 at 54.825 kb on + strand, within Psest_0052 at 54.825 kb on + strand, within Psest_0052 at 54.825 kb on + strand, within Psest_0052 at 54.831 kb on + strand, within Psest_0052 at 54.831 kb on + strand, within Psest_0052 at 54.831 kb on + strand, within Psest_0052 at 54.831 kb on + strand, within Psest_0052 at 54.832 kb on - strand, within Psest_0052 at 54.832 kb on - strand, within Psest_0052 at 54.832 kb on - strand, within Psest_0052 at 54.832 kb on - strand, within Psest_0052 at 54.862 kb on - strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 54.999 kb on + strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.000 kb on - strand, within Psest_0052 at 55.034 kb on + strand, within Psest_0052 at 55.065 kb on + strand, within Psest_0052 at 55.065 kb on + strand, within Psest_0052 at 55.066 kb on - strand, within Psest_0052 at 55.066 kb on - strand, within Psest_0052 at 55.168 kb on - strand, within Psest_0052 at 55.199 kb on + strand, within Psest_0052 at 55.200 kb on - strand, within Psest_0052 at 55.200 kb on - strand, within Psest_0052 at 55.264 kb on - strand at 55.306 kb on + strand at 55.313 kb on - strand at 55.313 kb on - strand at 55.421 kb on - strand at 55.424 kb on - strand at 55.424 kb on - strand at 55.424 kb on - strand at 55.834 kb on + strand, within Psest_0053 at 56.182 kb on + strand, within Psest_0054 at 56.183 kb on - strand, within Psest_0054 at 56.183 kb on - strand, within Psest_0054 at 56.200 kb on + strand, within Psest_0054 at 56.201 kb on - strand, within Psest_0054 at 56.248 kb on + strand, within Psest_0054 at 56.249 kb on - strand, within Psest_0054 at 56.249 kb on - strand, within Psest_0054
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 53,596 - +0.5 53,659 + +0.9 53,659 + +0.9 53,659 + -0.8 53,660 - -1.2 53,660 - -0.0 53,676 + +0.1 53,676 + +1.3 53,676 + +0.4 53,677 - +1.7 53,761 - Psest_0050 0.17 -0.8 53,946 + Psest_0050 0.83 +1.0 53,946 + Psest_0050 0.83 +0.1 53,946 + Psest_0050 0.83 -0.1 53,946 + Psest_0050 0.83 +0.6 53,946 + Psest_0050 0.83 -0.3 53,947 - Psest_0050 0.83 +0.6 53,947 - Psest_0050 0.83 +1.0 53,947 - Psest_0050 0.83 -0.9 53,947 - Psest_0050 0.83 -0.9 53,947 - Psest_0050 0.83 -0.4 53,999 - -0.5 54,019 + -0.4 54,019 + +0.6 54,019 + -0.6 54,019 + -1.5 54,019 + +1.0 54,019 + +0.6 54,020 - +0.2 54,040 + +0.9 54,041 - +1.0 54,134 - +1.4 54,218 + +0.7 54,219 - -1.2 54,276 + Psest_0051 0.27 +0.5 54,276 + Psest_0051 0.27 -0.2 54,277 - Psest_0051 0.27 -0.5 54,277 - Psest_0051 0.27 -1.2 54,277 - Psest_0051 0.27 -0.2 54,277 - Psest_0051 0.27 +0.3 54,433 + Psest_0051 0.75 +1.6 54,433 + Psest_0051 0.75 -0.8 54,433 + Psest_0051 0.75 +1.1 54,433 + Psest_0051 0.75 +2.6 54,434 - Psest_0051 0.75 -1.0 54,434 - Psest_0051 0.75 +0.3 54,434 - Psest_0051 0.75 -0.4 54,488 + +2.0 54,488 + +0.2 54,488 + -0.3 54,488 + +0.4 54,488 + +0.5 54,489 - +0.7 54,489 - +0.7 54,735 + Psest_0052 0.28 +1.4 54,736 - Psest_0052 0.28 +1.1 54,736 - Psest_0052 0.28 +0.6 54,736 - Psest_0052 0.28 -0.5 54,736 - Psest_0052 0.28 -0.0 54,736 - Psest_0052 0.28 +0.1 54,780 + Psest_0052 0.34 +0.3 54,803 + Psest_0052 0.37 +0.6 54,825 + Psest_0052 0.40 +1.0 54,825 + Psest_0052 0.40 -0.0 54,825 + Psest_0052 0.40 +0.4 54,831 + Psest_0052 0.40 +1.3 54,831 + Psest_0052 0.40 +0.6 54,831 + Psest_0052 0.40 -0.6 54,831 + Psest_0052 0.40 +3.6 54,832 - Psest_0052 0.41 -1.6 54,832 - Psest_0052 0.41 +2.6 54,832 - Psest_0052 0.41 -0.0 54,832 - Psest_0052 0.41 +0.6 54,862 - Psest_0052 0.44 +0.5 54,999 + Psest_0052 0.63 +1.0 54,999 + Psest_0052 0.63 +1.6 54,999 + Psest_0052 0.63 +0.7 54,999 + Psest_0052 0.63 +0.7 54,999 + Psest_0052 0.63 +1.7 54,999 + Psest_0052 0.63 +0.9 54,999 + Psest_0052 0.63 +1.7 54,999 + Psest_0052 0.63 +0.6 54,999 + Psest_0052 0.63 +0.6 54,999 + Psest_0052 0.63 +0.3 55,000 - Psest_0052 0.63 -0.0 55,000 - Psest_0052 0.63 +0.1 55,000 - Psest_0052 0.63 +0.9 55,000 - Psest_0052 0.63 +1.5 55,000 - Psest_0052 0.63 +1.3 55,000 - Psest_0052 0.63 +1.1 55,000 - Psest_0052 0.63 -0.1 55,000 - Psest_0052 0.63 -0.4 55,000 - Psest_0052 0.63 -0.0 55,000 - Psest_0052 0.63 +0.4 55,034 + Psest_0052 0.67 +2.3 55,065 + Psest_0052 0.71 +0.8 55,065 + Psest_0052 0.71 +1.4 55,066 - Psest_0052 0.72 +0.7 55,066 - Psest_0052 0.72 -0.2 55,168 - Psest_0052 0.85 +0.5 55,199 + Psest_0052 0.89 +1.4 55,200 - Psest_0052 0.89 +0.3 55,200 - Psest_0052 0.89 -0.2 55,264 - -1.2 55,306 + -0.6 55,313 - +0.2 55,313 - +0.4 55,421 - +0.2 55,424 - -0.9 55,424 - +0.4 55,424 - +0.2 55,834 + Psest_0053 0.77 +1.0 56,182 + Psest_0054 0.37 -0.1 56,183 - Psest_0054 0.37 +1.4 56,183 - Psest_0054 0.37 +0.2 56,200 + Psest_0054 0.41 +0.3 56,201 - Psest_0054 0.42 -0.0 56,248 + Psest_0054 0.54 +0.3 56,249 - Psest_0054 0.54 -0.0 56,249 - Psest_0054 0.54 +1.0
Or see this region's nucleotide sequence