Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04160

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04140 and PGA1_c04150 overlap by 20 nucleotidesPGA1_c04150 and PGA1_c04160 are separated by 63 nucleotidesPGA1_c04160 and PGA1_c04170 are separated by 65 nucleotidesPGA1_c04170 and PGA1_c04180 are separated by 176 nucleotides PGA1_c04140: PGA1_c04140 - putative acyl-CoA dehydrogenase, at 401,615 to 402,760 _c04140 PGA1_c04150: PGA1_c04150 - thioesterase domain-containing protein, at 402,741 to 403,205 _c04150 PGA1_c04160: PGA1_c04160 - putative crotonobetaine/carnitine-CoA ligase, at 403,269 to 404,774 _c04160 PGA1_c04170: PGA1_c04170 - ribulose-phosphate 3-epimerase Rpe, at 404,840 to 405,529 _c04170 PGA1_c04180: PGA1_c04180 - phosphonates import ATP-binding protein PhnC, at 405,706 to 406,524 _c04180 Position (kb) 403 404 405Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 402.372 kb on - strand, within PGA1_c04140at 402.374 kb on - strand, within PGA1_c04140at 402.403 kb on + strand, within PGA1_c04140at 402.497 kb on - strand, within PGA1_c04140at 402.497 kb on - strand, within PGA1_c04140at 402.499 kb on + strand, within PGA1_c04140at 402.499 kb on + strand, within PGA1_c04140at 402.512 kb on - strand, within PGA1_c04140at 402.514 kb on + strand, within PGA1_c04140at 402.514 kb on + strand, within PGA1_c04140at 402.725 kb on + strandat 402.746 kb on - strandat 402.753 kb on - strandat 402.754 kb on + strandat 402.801 kb on - strand, within PGA1_c04150at 402.846 kb on - strand, within PGA1_c04150at 402.846 kb on - strand, within PGA1_c04150at 402.886 kb on - strand, within PGA1_c04150at 402.886 kb on - strand, within PGA1_c04150at 402.933 kb on + strand, within PGA1_c04150at 403.057 kb on - strand, within PGA1_c04150at 403.082 kb on - strand, within PGA1_c04150at 403.087 kb on - strand, within PGA1_c04150at 403.124 kb on - strand, within PGA1_c04150at 403.139 kb on + strand, within PGA1_c04150at 403.209 kb on - strandat 403.209 kb on - strandat 403.251 kb on + strandat 403.251 kb on + strandat 403.262 kb on - strandat 403.266 kb on + strandat 403.267 kb on - strandat 403.321 kb on - strandat 403.347 kb on - strandat 403.355 kb on + strandat 403.406 kb on - strandat 403.406 kb on - strandat 403.417 kb on - strandat 403.426 kb on + strand, within PGA1_c04160at 403.478 kb on + strand, within PGA1_c04160at 403.494 kb on - strand, within PGA1_c04160at 403.568 kb on + strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.583 kb on + strand, within PGA1_c04160at 403.588 kb on - strand, within PGA1_c04160at 403.733 kb on + strand, within PGA1_c04160at 403.733 kb on + strand, within PGA1_c04160at 403.736 kb on - strand, within PGA1_c04160at 403.736 kb on - strand, within PGA1_c04160at 403.741 kb on - strand, within PGA1_c04160at 403.773 kb on + strand, within PGA1_c04160at 403.821 kb on - strand, within PGA1_c04160at 403.842 kb on + strand, within PGA1_c04160at 403.847 kb on + strand, within PGA1_c04160at 403.847 kb on + strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.857 kb on + strand, within PGA1_c04160at 403.865 kb on - strand, within PGA1_c04160at 403.875 kb on + strand, within PGA1_c04160at 403.883 kb on - strand, within PGA1_c04160at 403.892 kb on + strand, within PGA1_c04160at 403.926 kb on - strand, within PGA1_c04160at 403.943 kb on + strand, within PGA1_c04160at 403.943 kb on + strand, within PGA1_c04160at 403.951 kb on - strand, within PGA1_c04160at 403.976 kb on + strand, within PGA1_c04160at 403.989 kb on - strand, within PGA1_c04160at 403.991 kb on + strand, within PGA1_c04160at 404.047 kb on + strand, within PGA1_c04160at 404.054 kb on - strand, within PGA1_c04160at 404.055 kb on + strand, within PGA1_c04160at 404.087 kb on + strand, within PGA1_c04160at 404.100 kb on - strand, within PGA1_c04160at 404.129 kb on - strand, within PGA1_c04160at 404.189 kb on + strand, within PGA1_c04160at 404.194 kb on + strand, within PGA1_c04160at 404.209 kb on + strand, within PGA1_c04160at 404.244 kb on - strand, within PGA1_c04160at 404.251 kb on + strand, within PGA1_c04160at 404.251 kb on + strand, within PGA1_c04160at 404.251 kb on + strand, within PGA1_c04160at 404.251 kb on + strand, within PGA1_c04160at 404.253 kb on + strand, within PGA1_c04160at 404.254 kb on - strand, within PGA1_c04160at 404.259 kb on - strand, within PGA1_c04160at 404.259 kb on - strand, within PGA1_c04160at 404.276 kb on - strand, within PGA1_c04160at 404.301 kb on + strand, within PGA1_c04160at 404.301 kb on + strand, within PGA1_c04160at 404.370 kb on + strand, within PGA1_c04160at 404.372 kb on + strand, within PGA1_c04160at 404.589 kb on + strand, within PGA1_c04160at 404.611 kb on + strand, within PGA1_c04160at 404.659 kb on - strandat 404.664 kb on + strandat 404.696 kb on + strandat 404.754 kb on + strandat 404.822 kb on - strandat 405.587 kb on - strandat 405.619 kb on + strandat 405.670 kb on + strandat 405.670 kb on + strandat 405.678 kb on - strandat 405.678 kb on - strandat 405.678 kb on - strandat 405.680 kb on + strandat 405.680 kb on + strandat 405.688 kb on - strandat 405.688 kb on - strandat 405.701 kb on + strandat 405.701 kb on + strandat 405.708 kb on - strandat 405.756 kb on + strandat 405.756 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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402,372 - PGA1_c04140 0.66 -0.6
402,374 - PGA1_c04140 0.66 +0.5
402,403 + PGA1_c04140 0.69 -0.4
402,497 - PGA1_c04140 0.77 +0.7
402,497 - PGA1_c04140 0.77 -2.5
402,499 + PGA1_c04140 0.77 -2.2
402,499 + PGA1_c04140 0.77 -2.2
402,512 - PGA1_c04140 0.78 -0.9
402,514 + PGA1_c04140 0.78 -1.5
402,514 + PGA1_c04140 0.78 +1.2
402,725 + -1.6
402,746 - +1.8
402,753 - +0.8
402,754 + +0.7
402,801 - PGA1_c04150 0.13 +0.2
402,846 - PGA1_c04150 0.23 -0.2
402,846 - PGA1_c04150 0.23 -0.7
402,886 - PGA1_c04150 0.31 +1.4
402,886 - PGA1_c04150 0.31 +1.0
402,933 + PGA1_c04150 0.41 -2.5
403,057 - PGA1_c04150 0.68 -3.3
403,082 - PGA1_c04150 0.73 -1.1
403,087 - PGA1_c04150 0.74 +0.0
403,124 - PGA1_c04150 0.82 -2.7
403,139 + PGA1_c04150 0.86 -0.2
403,209 - +0.3
403,209 - +1.2
403,251 + -1.5
403,251 + -0.6
403,262 - +0.8
403,266 + -0.8
403,267 - +0.5
403,321 - -0.9
403,347 - -2.2
403,355 + -0.5
403,406 - -1.0
403,406 - -1.9
403,417 - -1.1
403,426 + PGA1_c04160 0.10 +2.3
403,478 + PGA1_c04160 0.14 +2.4
403,494 - PGA1_c04160 0.15 +0.2
403,568 + PGA1_c04160 0.20 +0.1
403,576 - PGA1_c04160 0.20 +0.6
403,576 - PGA1_c04160 0.20 +1.2
403,576 - PGA1_c04160 0.20 +1.6
403,583 + PGA1_c04160 0.21 +0.4
403,588 - PGA1_c04160 0.21 +0.0
403,733 + PGA1_c04160 0.31 +1.0
403,733 + PGA1_c04160 0.31 -1.1
403,736 - PGA1_c04160 0.31 -0.3
403,736 - PGA1_c04160 0.31 -2.6
403,741 - PGA1_c04160 0.31 +0.1
403,773 + PGA1_c04160 0.33 +0.8
403,821 - PGA1_c04160 0.37 +1.2
403,842 + PGA1_c04160 0.38 -0.6
403,847 + PGA1_c04160 0.38 -2.1
403,847 + PGA1_c04160 0.38 +1.7
403,855 - PGA1_c04160 0.39 +0.1
403,855 - PGA1_c04160 0.39 +1.2
403,855 - PGA1_c04160 0.39 +0.8
403,857 + PGA1_c04160 0.39 -0.2
403,865 - PGA1_c04160 0.40 -1.0
403,875 + PGA1_c04160 0.40 +0.0
403,883 - PGA1_c04160 0.41 +0.8
403,892 + PGA1_c04160 0.41 -2.0
403,926 - PGA1_c04160 0.44 +0.0
403,943 + PGA1_c04160 0.45 -0.9
403,943 + PGA1_c04160 0.45 +0.3
403,951 - PGA1_c04160 0.45 +1.4
403,976 + PGA1_c04160 0.47 -0.5
403,989 - PGA1_c04160 0.48 +0.9
403,991 + PGA1_c04160 0.48 +0.8
404,047 + PGA1_c04160 0.52 +1.2
404,054 - PGA1_c04160 0.52 -2.8
404,055 + PGA1_c04160 0.52 +1.9
404,087 + PGA1_c04160 0.54 +0.6
404,100 - PGA1_c04160 0.55 +2.1
404,129 - PGA1_c04160 0.57 -0.1
404,189 + PGA1_c04160 0.61 -0.3
404,194 + PGA1_c04160 0.61 +0.7
404,209 + PGA1_c04160 0.62 -1.1
404,244 - PGA1_c04160 0.65 -1.9
404,251 + PGA1_c04160 0.65 +1.9
404,251 + PGA1_c04160 0.65 +0.5
404,251 + PGA1_c04160 0.65 +0.1
404,251 + PGA1_c04160 0.65 +2.1
404,253 + PGA1_c04160 0.65 +0.1
404,254 - PGA1_c04160 0.65 -0.9
404,259 - PGA1_c04160 0.66 +0.3
404,259 - PGA1_c04160 0.66 -1.0
404,276 - PGA1_c04160 0.67 -1.1
404,301 + PGA1_c04160 0.69 +0.2
404,301 + PGA1_c04160 0.69 -2.7
404,370 + PGA1_c04160 0.73 +0.6
404,372 + PGA1_c04160 0.73 -0.6
404,589 + PGA1_c04160 0.88 -1.8
404,611 + PGA1_c04160 0.89 -0.4
404,659 - -2.8
404,664 + +1.2
404,696 + -1.3
404,754 + +1.5
404,822 - +0.1
405,587 - +1.1
405,619 + +0.4
405,670 + +0.0
405,670 + -0.3
405,678 - +0.6
405,678 - -0.6
405,678 - +0.1
405,680 + -2.9
405,680 + +0.9
405,688 - +0.2
405,688 - +1.7
405,701 + -0.7
405,701 + +0.1
405,708 - -2.7
405,756 + -1.0
405,756 + +0.5

Or see this region's nucleotide sequence