Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2926 and Psest_2927 are separated by 2 nucleotides Psest_2927 and Psest_2928 are separated by 3 nucleotides
Psest_2926: Psest_2926 - TIGR03440 family protein, at 3,119,949 to 3,121,244
_2926
Psest_2927: Psest_2927 - probable methyltransferase, at 3,121,247 to 3,122,209
_2927
Psest_2928: Psest_2928 - Subtilisin-like serine proteases, at 3,122,213 to 3,123,991
_2928
Position (kb)
3121
3122
3123 Strain fitness (log2 ratio)
-2
-1
0
1 at 3120.294 kb on + strand, within Psest_2926 at 3120.294 kb on + strand, within Psest_2926 at 3120.294 kb on + strand, within Psest_2926 at 3120.295 kb on - strand, within Psest_2926 at 3120.295 kb on - strand, within Psest_2926 at 3120.295 kb on - strand, within Psest_2926 at 3120.295 kb on - strand, within Psest_2926 at 3120.660 kb on + strand, within Psest_2926 at 3120.760 kb on - strand, within Psest_2926 at 3120.850 kb on - strand, within Psest_2926 at 3120.850 kb on - strand, within Psest_2926 at 3120.850 kb on - strand, within Psest_2926 at 3120.852 kb on + strand, within Psest_2926 at 3120.867 kb on + strand, within Psest_2926 at 3120.964 kb on - strand, within Psest_2926 at 3121.095 kb on + strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.096 kb on - strand, within Psest_2926 at 3121.176 kb on + strand at 3121.364 kb on + strand, within Psest_2927 at 3121.365 kb on - strand, within Psest_2927 at 3121.415 kb on + strand, within Psest_2927 at 3121.415 kb on + strand, within Psest_2927 at 3121.415 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.418 kb on + strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.419 kb on - strand, within Psest_2927 at 3121.566 kb on - strand, within Psest_2927 at 3121.566 kb on - strand, within Psest_2927 at 3121.863 kb on - strand, within Psest_2927 at 3121.863 kb on - strand, within Psest_2927 at 3121.973 kb on + strand, within Psest_2927 at 3122.093 kb on + strand, within Psest_2927 at 3122.094 kb on - strand, within Psest_2927 at 3122.099 kb on + strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.100 kb on - strand, within Psest_2927 at 3122.192 kb on + strand at 3122.193 kb on - strand at 3122.271 kb on - strand at 3122.271 kb on - strand at 3122.271 kb on - strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.272 kb on + strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.273 kb on - strand at 3122.402 kb on + strand, within Psest_2928 at 3122.402 kb on + strand, within Psest_2928 at 3122.403 kb on - strand, within Psest_2928 at 3122.484 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.615 kb on + strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.616 kb on - strand, within Psest_2928 at 3122.690 kb on + strand, within Psest_2928 at 3122.691 kb on - strand, within Psest_2928 at 3122.732 kb on + strand, within Psest_2928 at 3122.933 kb on + strand, within Psest_2928 at 3122.934 kb on - strand, within Psest_2928 at 3122.934 kb on - strand, within Psest_2928 at 3122.934 kb on - strand, within Psest_2928 at 3123.041 kb on + strand, within Psest_2928 at 3123.041 kb on + strand, within Psest_2928 at 3123.041 kb on + strand, within Psest_2928
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,120,294 + Psest_2926 0.27 -0.8 3,120,294 + Psest_2926 0.27 +0.7 3,120,294 + Psest_2926 0.27 +0.1 3,120,295 - Psest_2926 0.27 +0.5 3,120,295 - Psest_2926 0.27 +0.5 3,120,295 - Psest_2926 0.27 +0.1 3,120,295 - Psest_2926 0.27 -1.9 3,120,660 + Psest_2926 0.55 -0.4 3,120,760 - Psest_2926 0.63 -0.3 3,120,850 - Psest_2926 0.70 +0.1 3,120,850 - Psest_2926 0.70 +1.4 3,120,850 - Psest_2926 0.70 +0.3 3,120,852 + Psest_2926 0.70 -0.3 3,120,867 + Psest_2926 0.71 +0.8 3,120,964 - Psest_2926 0.78 +0.3 3,121,095 + Psest_2926 0.88 +0.1 3,121,096 - Psest_2926 0.89 +1.3 3,121,096 - Psest_2926 0.89 +1.1 3,121,096 - Psest_2926 0.89 +0.4 3,121,096 - Psest_2926 0.89 -0.0 3,121,096 - Psest_2926 0.89 -0.1 3,121,176 + +1.3 3,121,364 + Psest_2927 0.12 +0.3 3,121,365 - Psest_2927 0.12 -0.0 3,121,415 + Psest_2927 0.17 +0.4 3,121,415 + Psest_2927 0.17 +0.5 3,121,415 + Psest_2927 0.17 +0.6 3,121,418 + Psest_2927 0.18 -0.1 3,121,418 + Psest_2927 0.18 +0.2 3,121,418 + Psest_2927 0.18 +0.1 3,121,418 + Psest_2927 0.18 +0.6 3,121,418 + Psest_2927 0.18 +0.8 3,121,418 + Psest_2927 0.18 -1.5 3,121,418 + Psest_2927 0.18 +1.6 3,121,418 + Psest_2927 0.18 +0.0 3,121,419 - Psest_2927 0.18 +0.9 3,121,419 - Psest_2927 0.18 +0.2 3,121,419 - Psest_2927 0.18 +0.8 3,121,419 - Psest_2927 0.18 +0.7 3,121,419 - Psest_2927 0.18 +0.8 3,121,419 - Psest_2927 0.18 +0.8 3,121,419 - Psest_2927 0.18 +0.9 3,121,566 - Psest_2927 0.33 -0.4 3,121,566 - Psest_2927 0.33 +1.6 3,121,863 - Psest_2927 0.64 +0.2 3,121,863 - Psest_2927 0.64 +0.7 3,121,973 + Psest_2927 0.75 +0.1 3,122,093 + Psest_2927 0.88 +0.6 3,122,094 - Psest_2927 0.88 +1.2 3,122,099 + Psest_2927 0.88 +0.8 3,122,100 - Psest_2927 0.89 +0.6 3,122,100 - Psest_2927 0.89 -0.9 3,122,100 - Psest_2927 0.89 -0.4 3,122,100 - Psest_2927 0.89 -0.5 3,122,100 - Psest_2927 0.89 +0.7 3,122,100 - Psest_2927 0.89 -0.2 3,122,100 - Psest_2927 0.89 +0.8 3,122,100 - Psest_2927 0.89 +1.0 3,122,192 + -0.9 3,122,193 - +0.1 3,122,271 - +0.8 3,122,271 - +0.8 3,122,271 - +0.3 3,122,272 + +0.3 3,122,272 + +0.3 3,122,272 + +0.7 3,122,272 + -0.6 3,122,272 + +0.5 3,122,272 + -0.0 3,122,272 + -1.5 3,122,272 + -0.8 3,122,272 + -1.4 3,122,272 + -0.2 3,122,272 + +0.8 3,122,273 - +1.1 3,122,273 - -1.1 3,122,273 - +0.6 3,122,273 - -0.9 3,122,273 - +0.5 3,122,273 - -0.2 3,122,273 - -0.1 3,122,273 - +0.6 3,122,273 - +0.4 3,122,273 - -0.5 3,122,273 - -0.4 3,122,273 - +0.4 3,122,273 - -0.8 3,122,273 - +0.5 3,122,273 - -0.9 3,122,402 + Psest_2928 0.11 +0.3 3,122,402 + Psest_2928 0.11 +0.4 3,122,403 - Psest_2928 0.11 +0.1 3,122,484 + Psest_2928 0.15 -0.3 3,122,615 + Psest_2928 0.23 +1.3 3,122,615 + Psest_2928 0.23 -0.9 3,122,615 + Psest_2928 0.23 +0.2 3,122,615 + Psest_2928 0.23 +0.5 3,122,615 + Psest_2928 0.23 +0.5 3,122,615 + Psest_2928 0.23 -0.0 3,122,615 + Psest_2928 0.23 -0.7 3,122,615 + Psest_2928 0.23 +1.1 3,122,615 + Psest_2928 0.23 +1.4 3,122,615 + Psest_2928 0.23 -0.0 3,122,615 + Psest_2928 0.23 +0.2 3,122,615 + Psest_2928 0.23 +0.1 3,122,615 + Psest_2928 0.23 +0.4 3,122,615 + Psest_2928 0.23 +1.1 3,122,616 - Psest_2928 0.23 +0.4 3,122,616 - Psest_2928 0.23 +0.6 3,122,616 - Psest_2928 0.23 +0.2 3,122,616 - Psest_2928 0.23 +1.4 3,122,616 - Psest_2928 0.23 +1.4 3,122,616 - Psest_2928 0.23 +0.1 3,122,616 - Psest_2928 0.23 -0.2 3,122,616 - Psest_2928 0.23 -0.4 3,122,616 - Psest_2928 0.23 -0.3 3,122,616 - Psest_2928 0.23 +0.1 3,122,616 - Psest_2928 0.23 +0.1 3,122,616 - Psest_2928 0.23 +0.8 3,122,616 - Psest_2928 0.23 +0.5 3,122,616 - Psest_2928 0.23 +0.3 3,122,616 - Psest_2928 0.23 -0.4 3,122,690 + Psest_2928 0.27 +1.1 3,122,691 - Psest_2928 0.27 +0.8 3,122,732 + Psest_2928 0.29 +1.1 3,122,933 + Psest_2928 0.40 +0.4 3,122,934 - Psest_2928 0.41 +1.4 3,122,934 - Psest_2928 0.41 -0.5 3,122,934 - Psest_2928 0.41 +1.1 3,123,041 + Psest_2928 0.47 +0.1 3,123,041 + Psest_2928 0.47 +0.6 3,123,041 + Psest_2928 0.47 -1.3
Or see this region's nucleotide sequence