Strain Fitness in Marinobacter adhaerens HP15 around HP15_2017

Experiment: m.b. pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2015 and HP15_2016 are separated by 101 nucleotidesHP15_2016 and HP15_2017 overlap by 4 nucleotidesHP15_2017 and HP15_2018 overlap by 14 nucleotidesHP15_2018 and HP15_2019 are separated by 9 nucleotides HP15_2015: HP15_2015 - inner-membrane translocator, at 2,116,299 to 2,117,195 _2015 HP15_2016: HP15_2016 - inner-membrane translocator, at 2,117,297 to 2,118,145 _2016 HP15_2017: HP15_2017 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,118,142 to 2,118,945 _2017 HP15_2018: HP15_2018 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,118,932 to 2,119,588 _2018 HP15_2019: HP15_2019 - iron-containing alcohol dehydrogenase, at 2,119,598 to 2,120,755 _2019 Position (kb) 2118 2119Strain fitness (log2 ratio) -1 0 1at 2117.300 kb on + strandat 2117.307 kb on + strandat 2117.307 kb on + strandat 2117.308 kb on - strandat 2117.308 kb on - strandat 2117.322 kb on + strandat 2117.363 kb on - strandat 2117.377 kb on - strandat 2117.421 kb on - strand, within HP15_2016at 2117.801 kb on - strand, within HP15_2016at 2117.801 kb on - strand, within HP15_2016at 2117.857 kb on + strand, within HP15_2016at 2117.944 kb on - strand, within HP15_2016at 2118.026 kb on + strand, within HP15_2016at 2118.092 kb on + strandat 2118.259 kb on - strand, within HP15_2017at 2118.299 kb on + strand, within HP15_2017at 2118.314 kb on - strand, within HP15_2017at 2118.582 kb on + strand, within HP15_2017at 2118.590 kb on - strand, within HP15_2017at 2118.601 kb on + strand, within HP15_2017at 2118.726 kb on - strand, within HP15_2017at 2118.774 kb on + strand, within HP15_2017at 2118.774 kb on + strand, within HP15_2017at 2118.782 kb on - strand, within HP15_2017at 2118.808 kb on + strand, within HP15_2017at 2118.833 kb on + strand, within HP15_2017at 2119.041 kb on + strand, within HP15_2018at 2119.232 kb on + strand, within HP15_2018at 2119.330 kb on - strand, within HP15_2018at 2119.358 kb on + strand, within HP15_2018at 2119.366 kb on - strand, within HP15_2018at 2119.366 kb on - strand, within HP15_2018at 2119.366 kb on - strand, within HP15_2018at 2119.417 kb on - strand, within HP15_2018at 2119.495 kb on - strand, within HP15_2018at 2119.503 kb on - strand, within HP15_2018at 2119.523 kb on + strandat 2119.843 kb on - strand, within HP15_2019

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH7
remove
2,117,300 + +0.2
2,117,307 + +0.0
2,117,307 + -1.2
2,117,308 - +0.2
2,117,308 - +0.0
2,117,322 + -0.4
2,117,363 - +0.5
2,117,377 - +0.1
2,117,421 - HP15_2016 0.15 -0.2
2,117,801 - HP15_2016 0.59 +0.4
2,117,801 - HP15_2016 0.59 +0.2
2,117,857 + HP15_2016 0.66 -0.1
2,117,944 - HP15_2016 0.76 -0.1
2,118,026 + HP15_2016 0.86 +0.2
2,118,092 + -0.7
2,118,259 - HP15_2017 0.15 +1.3
2,118,299 + HP15_2017 0.20 +1.6
2,118,314 - HP15_2017 0.21 +0.1
2,118,582 + HP15_2017 0.55 +0.2
2,118,590 - HP15_2017 0.56 +0.5
2,118,601 + HP15_2017 0.57 -0.2
2,118,726 - HP15_2017 0.73 +1.0
2,118,774 + HP15_2017 0.79 -0.3
2,118,774 + HP15_2017 0.79 +0.1
2,118,782 - HP15_2017 0.80 +1.5
2,118,808 + HP15_2017 0.83 +0.9
2,118,833 + HP15_2017 0.86 -0.2
2,119,041 + HP15_2018 0.17 +0.9
2,119,232 + HP15_2018 0.46 -0.2
2,119,330 - HP15_2018 0.61 -0.4
2,119,358 + HP15_2018 0.65 -0.3
2,119,366 - HP15_2018 0.66 +0.1
2,119,366 - HP15_2018 0.66 +0.7
2,119,366 - HP15_2018 0.66 +0.1
2,119,417 - HP15_2018 0.74 +0.0
2,119,495 - HP15_2018 0.86 -0.1
2,119,503 - HP15_2018 0.87 -0.3
2,119,523 + +1.2
2,119,843 - HP15_2019 0.21 -0.5

Or see this region's nucleotide sequence