Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2250

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2248 and Dshi_2249 are separated by 8 nucleotidesDshi_2249 and Dshi_2250 overlap by 4 nucleotidesDshi_2250 and Dshi_2251 are separated by 2 nucleotides Dshi_2248: Dshi_2248 - putative aggregation factor core (RefSeq), at 2,370,080 to 2,370,526 _2248 Dshi_2249: Dshi_2249 - NusB antitermination factor (RefSeq), at 2,370,535 to 2,371,014 _2249 Dshi_2250: Dshi_2250 - 6,7-dimethyl-8-ribityllumazine synthase (RefSeq), at 2,371,011 to 2,371,562 _2250 Dshi_2251: Dshi_2251 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 2,371,565 to 2,372,680 _2251 Position (kb) 2371 2372Strain fitness (log2 ratio) -1 0 1 2at 2370.085 kb on - strandat 2370.118 kb on + strandat 2370.126 kb on - strand, within Dshi_2248at 2370.236 kb on - strand, within Dshi_2248at 2370.238 kb on + strand, within Dshi_2248at 2370.246 kb on - strand, within Dshi_2248at 2370.260 kb on - strand, within Dshi_2248at 2370.292 kb on + strand, within Dshi_2248at 2370.314 kb on + strand, within Dshi_2248

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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2,370,085 - -0.6
2,370,118 + +1.0
2,370,126 - Dshi_2248 0.10 -0.6
2,370,236 - Dshi_2248 0.35 +0.3
2,370,238 + Dshi_2248 0.35 +0.0
2,370,246 - Dshi_2248 0.37 -0.7
2,370,260 - Dshi_2248 0.40 +1.9
2,370,292 + Dshi_2248 0.47 +0.7
2,370,314 + Dshi_2248 0.52 -0.9

Or see this region's nucleotide sequence