Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0859 and Dshi_0860 overlap by 4 nucleotides Dshi_0860 and Dshi_0861 are separated by 1 nucleotides Dshi_0861 and Dshi_0862 are separated by 128 nucleotides
Dshi_0859: Dshi_0859 - ABC transporter related (RefSeq), at 874,885 to 875,637
_0859
Dshi_0860: Dshi_0860 - inner-membrane translocator (RefSeq), at 875,634 to 876,608
_0860
Dshi_0861: Dshi_0861 - inner-membrane translocator (RefSeq), at 876,610 to 877,527
_0861
Dshi_0862: Dshi_0862 - Extracellular ligand-binding receptor (RefSeq), at 877,656 to 878,795
_0862
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.684 kb on + strand at 875.705 kb on + strand at 875.871 kb on - strand, within Dshi_0860 at 876.068 kb on + strand, within Dshi_0860 at 876.068 kb on + strand, within Dshi_0860 at 876.078 kb on - strand, within Dshi_0860 at 876.159 kb on + strand, within Dshi_0860 at 876.166 kb on - strand, within Dshi_0860 at 876.208 kb on - strand, within Dshi_0860 at 876.259 kb on + strand, within Dshi_0860 at 876.259 kb on + strand, within Dshi_0860 at 876.470 kb on + strand, within Dshi_0860 at 876.478 kb on - strand, within Dshi_0860 at 876.616 kb on - strand at 876.616 kb on - strand at 876.616 kb on - strand at 876.726 kb on - strand, within Dshi_0861 at 876.742 kb on + strand, within Dshi_0861 at 876.872 kb on - strand, within Dshi_0861 at 876.892 kb on - strand, within Dshi_0861 at 876.950 kb on + strand, within Dshi_0861 at 877.051 kb on + strand, within Dshi_0861 at 877.158 kb on + strand, within Dshi_0861 at 877.259 kb on - strand, within Dshi_0861 at 877.349 kb on + strand, within Dshi_0861 at 877.391 kb on + strand, within Dshi_0861 at 877.433 kb on - strand, within Dshi_0861 at 877.441 kb on - strand at 877.441 kb on - strand at 877.550 kb on + strand at 877.570 kb on + strand at 877.802 kb on - strand, within Dshi_0862 at 877.905 kb on + strand, within Dshi_0862 at 877.941 kb on + strand, within Dshi_0862 at 877.941 kb on + strand, within Dshi_0862 at 878.018 kb on + strand, within Dshi_0862 at 878.104 kb on - strand, within Dshi_0862 at 878.225 kb on + strand, within Dshi_0862 at 878.227 kb on - strand, within Dshi_0862 at 878.230 kb on + strand, within Dshi_0862 at 878.238 kb on - strand, within Dshi_0862 at 878.238 kb on - strand, within Dshi_0862 at 878.254 kb on + strand, within Dshi_0862 at 878.294 kb on + strand, within Dshi_0862 at 878.317 kb on + strand, within Dshi_0862 at 878.372 kb on + strand, within Dshi_0862 at 878.401 kb on - strand, within Dshi_0862 at 878.464 kb on - strand, within Dshi_0862 at 878.482 kb on + strand, within Dshi_0862
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 875,684 + +0.3 875,705 + +1.1 875,871 - Dshi_0860 0.24 +0.3 876,068 + Dshi_0860 0.45 -0.4 876,068 + Dshi_0860 0.45 +0.6 876,078 - Dshi_0860 0.46 -0.0 876,159 + Dshi_0860 0.54 -0.8 876,166 - Dshi_0860 0.55 +1.2 876,208 - Dshi_0860 0.59 -0.6 876,259 + Dshi_0860 0.64 -0.9 876,259 + Dshi_0860 0.64 -1.1 876,470 + Dshi_0860 0.86 -0.6 876,478 - Dshi_0860 0.87 -0.1 876,616 - -0.1 876,616 - -0.6 876,616 - +0.9 876,726 - Dshi_0861 0.13 +0.3 876,742 + Dshi_0861 0.14 +0.1 876,872 - Dshi_0861 0.29 +0.5 876,892 - Dshi_0861 0.31 +0.1 876,950 + Dshi_0861 0.37 -1.0 877,051 + Dshi_0861 0.48 +0.3 877,158 + Dshi_0861 0.60 +1.5 877,259 - Dshi_0861 0.71 +1.8 877,349 + Dshi_0861 0.81 +0.2 877,391 + Dshi_0861 0.85 +1.1 877,433 - Dshi_0861 0.90 -0.9 877,441 - -0.9 877,441 - -0.4 877,550 + -0.4 877,570 + +0.9 877,802 - Dshi_0862 0.13 +0.3 877,905 + Dshi_0862 0.22 +1.5 877,941 + Dshi_0862 0.25 -0.3 877,941 + Dshi_0862 0.25 -0.6 878,018 + Dshi_0862 0.32 -0.4 878,104 - Dshi_0862 0.39 -0.9 878,225 + Dshi_0862 0.50 -0.2 878,227 - Dshi_0862 0.50 +0.2 878,230 + Dshi_0862 0.50 -0.0 878,238 - Dshi_0862 0.51 -0.5 878,238 - Dshi_0862 0.51 +0.5 878,254 + Dshi_0862 0.52 +0.8 878,294 + Dshi_0862 0.56 +0.2 878,317 + Dshi_0862 0.58 -0.6 878,372 + Dshi_0862 0.63 -0.3 878,401 - Dshi_0862 0.65 +0.9 878,464 - Dshi_0862 0.71 -1.9 878,482 + Dshi_0862 0.72 -0.8
Or see this region's nucleotide sequence