Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0708 and Dshi_0709 are separated by 471 nucleotides Dshi_0709 and Dshi_0710 are separated by 65 nucleotides Dshi_0710 and Dshi_0711 overlap by 55 nucleotides
Dshi_0708: Dshi_0708 - hypothetical protein (RefSeq), at 715,275 to 716,246
_0708
Dshi_0709: Dshi_0709 - coenzyme A transferase (RefSeq), at 716,718 to 718,664
_0709
Dshi_0710: Dshi_0710 - hypothetical protein (RefSeq), at 718,730 to 719,377
_0710
Dshi_0711: Dshi_0711 - transcriptional regulator, LysR family (RefSeq), at 719,323 to 720,249
_0711
Position (kb) 716
717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 715.770 kb on + strand, within Dshi_0708 at 715.822 kb on + strand, within Dshi_0708 at 715.836 kb on + strand, within Dshi_0708 at 715.946 kb on + strand, within Dshi_0708 at 716.054 kb on + strand, within Dshi_0708 at 716.142 kb on - strand, within Dshi_0708 at 716.146 kb on - strand, within Dshi_0708 at 716.152 kb on - strand at 716.157 kb on + strand at 716.157 kb on - strand at 716.211 kb on - strand at 716.652 kb on + strand at 716.692 kb on - strand at 716.698 kb on + strand at 716.706 kb on - strand at 716.832 kb on + strand at 716.863 kb on + strand at 716.898 kb on + strand at 716.988 kb on - strand, within Dshi_0709 at 716.999 kb on + strand, within Dshi_0709 at 717.002 kb on - strand, within Dshi_0709 at 717.032 kb on + strand, within Dshi_0709 at 717.088 kb on - strand, within Dshi_0709 at 717.104 kb on + strand, within Dshi_0709 at 717.110 kb on - strand, within Dshi_0709 at 717.136 kb on - strand, within Dshi_0709 at 717.157 kb on + strand, within Dshi_0709 at 717.206 kb on + strand, within Dshi_0709 at 717.214 kb on - strand, within Dshi_0709 at 717.235 kb on - strand, within Dshi_0709 at 717.385 kb on + strand, within Dshi_0709 at 717.385 kb on + strand, within Dshi_0709 at 717.385 kb on + strand, within Dshi_0709 at 717.410 kb on + strand, within Dshi_0709 at 717.434 kb on + strand, within Dshi_0709 at 717.458 kb on + strand, within Dshi_0709 at 717.485 kb on - strand, within Dshi_0709 at 717.503 kb on + strand, within Dshi_0709 at 717.511 kb on - strand, within Dshi_0709 at 717.621 kb on + strand, within Dshi_0709 at 717.622 kb on + strand, within Dshi_0709 at 717.664 kb on - strand, within Dshi_0709 at 717.797 kb on + strand, within Dshi_0709 at 717.810 kb on + strand, within Dshi_0709 at 717.812 kb on + strand, within Dshi_0709 at 717.818 kb on - strand, within Dshi_0709 at 717.830 kb on - strand, within Dshi_0709 at 717.986 kb on + strand, within Dshi_0709 at 718.290 kb on - strand, within Dshi_0709 at 718.317 kb on + strand, within Dshi_0709 at 718.365 kb on + strand, within Dshi_0709 at 718.366 kb on + strand, within Dshi_0709 at 718.396 kb on - strand, within Dshi_0709 at 718.405 kb on - strand, within Dshi_0709 at 718.407 kb on + strand, within Dshi_0709 at 718.556 kb on + strand at 718.579 kb on + strand at 718.736 kb on - strand at 718.931 kb on - strand, within Dshi_0710 at 719.086 kb on - strand, within Dshi_0710 at 719.246 kb on - strand, within Dshi_0710 at 719.273 kb on + strand, within Dshi_0710 at 719.396 kb on + strand at 719.396 kb on + strand at 719.422 kb on + strand, within Dshi_0711 at 719.638 kb on - strand, within Dshi_0711
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 715,770 + Dshi_0708 0.51 +0.0 715,822 + Dshi_0708 0.56 +0.4 715,836 + Dshi_0708 0.58 +1.0 715,946 + Dshi_0708 0.69 +0.5 716,054 + Dshi_0708 0.80 +0.8 716,142 - Dshi_0708 0.89 +0.2 716,146 - Dshi_0708 0.90 +0.7 716,152 - +0.5 716,157 + +0.4 716,157 - +1.1 716,211 - +0.6 716,652 + -1.9 716,692 - +0.0 716,698 + -0.1 716,706 - +0.4 716,832 + -0.5 716,863 + -1.1 716,898 + +0.1 716,988 - Dshi_0709 0.14 +0.3 716,999 + Dshi_0709 0.14 -1.1 717,002 - Dshi_0709 0.15 -0.0 717,032 + Dshi_0709 0.16 -0.5 717,088 - Dshi_0709 0.19 -0.1 717,104 + Dshi_0709 0.20 -0.2 717,110 - Dshi_0709 0.20 -0.4 717,136 - Dshi_0709 0.21 -0.4 717,157 + Dshi_0709 0.23 +0.9 717,206 + Dshi_0709 0.25 +0.3 717,214 - Dshi_0709 0.25 -0.8 717,235 - Dshi_0709 0.27 +0.2 717,385 + Dshi_0709 0.34 +0.7 717,385 + Dshi_0709 0.34 +0.4 717,385 + Dshi_0709 0.34 +1.7 717,410 + Dshi_0709 0.36 +0.9 717,434 + Dshi_0709 0.37 +1.4 717,458 + Dshi_0709 0.38 +0.0 717,485 - Dshi_0709 0.39 +0.4 717,503 + Dshi_0709 0.40 +1.9 717,511 - Dshi_0709 0.41 -0.4 717,621 + Dshi_0709 0.46 +1.1 717,622 + Dshi_0709 0.46 -0.2 717,664 - Dshi_0709 0.49 +0.0 717,797 + Dshi_0709 0.55 -0.9 717,810 + Dshi_0709 0.56 -0.1 717,812 + Dshi_0709 0.56 +0.0 717,818 - Dshi_0709 0.56 -0.1 717,830 - Dshi_0709 0.57 -0.9 717,986 + Dshi_0709 0.65 +1.2 718,290 - Dshi_0709 0.81 +0.6 718,317 + Dshi_0709 0.82 +1.0 718,365 + Dshi_0709 0.85 -1.1 718,366 + Dshi_0709 0.85 +0.1 718,396 - Dshi_0709 0.86 -3.1 718,405 - Dshi_0709 0.87 +0.7 718,407 + Dshi_0709 0.87 +0.2 718,556 + -0.5 718,579 + +0.6 718,736 - +0.4 718,931 - Dshi_0710 0.31 -0.3 719,086 - Dshi_0710 0.55 +0.2 719,246 - Dshi_0710 0.80 +0.4 719,273 + Dshi_0710 0.84 -0.8 719,396 + -0.2 719,396 + +2.4 719,422 + Dshi_0711 0.11 +1.2 719,638 - Dshi_0711 0.34 -0.4
Or see this region's nucleotide sequence