Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07810

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07800 and PGA1_c07810 are separated by 232 nucleotidesPGA1_c07810 and PGA1_c07820 are separated by 34 nucleotides PGA1_c07800: PGA1_c07800 - putative transcriptional regulator, lacI family, at 806,594 to 807,619 _c07800 PGA1_c07810: PGA1_c07810 - aminotransferase class-III, at 807,852 to 809,225 _c07810 PGA1_c07820: PGA1_c07820 - putative peptidase M22, at 809,260 to 810,444 _c07820 Position (kb) 807 808 809 810Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 806.877 kb on + strand, within PGA1_c07800at 806.877 kb on + strand, within PGA1_c07800at 806.901 kb on - strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.932 kb on + strand, within PGA1_c07800at 806.935 kb on - strand, within PGA1_c07800at 806.960 kb on + strand, within PGA1_c07800at 806.982 kb on - strand, within PGA1_c07800at 807.032 kb on - strand, within PGA1_c07800at 807.081 kb on - strand, within PGA1_c07800at 807.264 kb on + strand, within PGA1_c07800at 807.305 kb on - strand, within PGA1_c07800at 807.322 kb on + strand, within PGA1_c07800at 807.388 kb on - strand, within PGA1_c07800at 807.434 kb on - strand, within PGA1_c07800at 807.551 kb on - strandat 807.568 kb on - strandat 807.568 kb on - strandat 807.570 kb on + strandat 807.686 kb on + strandat 807.694 kb on - strandat 807.732 kb on + strandat 807.740 kb on - strandat 807.740 kb on - strandat 807.771 kb on + strandat 807.773 kb on + strandat 807.800 kb on + strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.842 kb on - strandat 807.891 kb on + strandat 807.904 kb on + strandat 807.976 kb on + strandat 808.038 kb on - strand, within PGA1_c07810at 808.041 kb on + strand, within PGA1_c07810at 808.049 kb on - strand, within PGA1_c07810at 808.049 kb on - strand, within PGA1_c07810at 808.049 kb on - strand, within PGA1_c07810at 808.077 kb on + strand, within PGA1_c07810at 808.116 kb on + strand, within PGA1_c07810at 808.116 kb on + strand, within PGA1_c07810at 808.123 kb on + strand, within PGA1_c07810at 808.131 kb on - strand, within PGA1_c07810at 808.131 kb on - strand, within PGA1_c07810at 808.133 kb on + strand, within PGA1_c07810at 808.135 kb on + strand, within PGA1_c07810at 808.142 kb on - strand, within PGA1_c07810at 808.170 kb on + strand, within PGA1_c07810at 808.189 kb on - strand, within PGA1_c07810at 808.212 kb on + strand, within PGA1_c07810at 808.246 kb on - strand, within PGA1_c07810at 808.305 kb on - strand, within PGA1_c07810at 808.312 kb on + strand, within PGA1_c07810at 808.312 kb on + strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.325 kb on - strand, within PGA1_c07810at 808.342 kb on + strand, within PGA1_c07810at 808.350 kb on - strand, within PGA1_c07810at 808.396 kb on - strand, within PGA1_c07810at 808.420 kb on + strand, within PGA1_c07810at 808.420 kb on + strand, within PGA1_c07810at 808.441 kb on + strand, within PGA1_c07810at 808.458 kb on - strand, within PGA1_c07810at 808.507 kb on - strand, within PGA1_c07810at 808.515 kb on + strand, within PGA1_c07810at 808.533 kb on + strand, within PGA1_c07810at 808.543 kb on + strand, within PGA1_c07810at 808.631 kb on + strand, within PGA1_c07810at 808.650 kb on - strand, within PGA1_c07810at 808.722 kb on + strand, within PGA1_c07810at 808.732 kb on + strand, within PGA1_c07810at 808.732 kb on + strand, within PGA1_c07810at 808.740 kb on + strand, within PGA1_c07810at 808.794 kb on + strand, within PGA1_c07810at 808.797 kb on - strand, within PGA1_c07810at 808.818 kb on + strand, within PGA1_c07810at 808.885 kb on + strand, within PGA1_c07810at 808.886 kb on + strand, within PGA1_c07810at 808.894 kb on - strand, within PGA1_c07810at 808.894 kb on - strand, within PGA1_c07810at 808.895 kb on + strand, within PGA1_c07810at 808.955 kb on - strand, within PGA1_c07810at 808.961 kb on + strand, within PGA1_c07810at 809.002 kb on - strand, within PGA1_c07810at 809.060 kb on - strand, within PGA1_c07810at 809.088 kb on + strandat 809.096 kb on - strandat 809.096 kb on - strandat 809.101 kb on - strandat 809.119 kb on - strandat 809.125 kb on + strandat 809.173 kb on - strandat 809.173 kb on - strandat 809.195 kb on - strandat 809.214 kb on + strandat 809.214 kb on + strandat 809.214 kb on + strandat 809.214 kb on + strandat 809.214 kb on + strandat 809.269 kb on + strandat 809.269 kb on + strandat 809.269 kb on + strandat 809.269 kb on + strandat 809.270 kb on - strandat 809.277 kb on - strandat 809.277 kb on - strandat 809.279 kb on + strandat 809.318 kb on - strandat 809.369 kb on + strandat 809.382 kb on - strand, within PGA1_c07820at 809.444 kb on + strand, within PGA1_c07820at 809.484 kb on - strand, within PGA1_c07820at 809.517 kb on - strand, within PGA1_c07820at 809.517 kb on - strand, within PGA1_c07820at 809.623 kb on + strand, within PGA1_c07820at 809.658 kb on + strand, within PGA1_c07820at 809.658 kb on + strand, within PGA1_c07820at 809.716 kb on - strand, within PGA1_c07820at 809.766 kb on + strand, within PGA1_c07820at 809.766 kb on + strand, within PGA1_c07820at 809.794 kb on - strand, within PGA1_c07820at 809.796 kb on + strand, within PGA1_c07820at 809.825 kb on - strand, within PGA1_c07820at 809.825 kb on - strand, within PGA1_c07820at 809.860 kb on - strand, within PGA1_c07820at 809.889 kb on + strand, within PGA1_c07820at 809.889 kb on + strand, within PGA1_c07820at 809.897 kb on - strand, within PGA1_c07820at 809.935 kb on - strand, within PGA1_c07820at 809.945 kb on - strand, within PGA1_c07820at 809.953 kb on + strand, within PGA1_c07820at 810.110 kb on - strand, within PGA1_c07820at 810.110 kb on - strand, within PGA1_c07820

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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806,877 + PGA1_c07800 0.28 +0.1
806,877 + PGA1_c07800 0.28 +0.7
806,901 - PGA1_c07800 0.30 +1.4
806,910 + PGA1_c07800 0.31 +0.7
806,910 + PGA1_c07800 0.31 -0.5
806,910 + PGA1_c07800 0.31 -0.0
806,910 + PGA1_c07800 0.31 -1.2
806,910 + PGA1_c07800 0.31 -3.3
806,918 - PGA1_c07800 0.32 -1.2
806,918 - PGA1_c07800 0.32 +0.1
806,918 - PGA1_c07800 0.32 +0.6
806,927 + PGA1_c07800 0.32 +1.1
806,927 + PGA1_c07800 0.32 +3.1
806,927 + PGA1_c07800 0.32 +0.5
806,932 + PGA1_c07800 0.33 +0.4
806,935 - PGA1_c07800 0.33 +0.4
806,960 + PGA1_c07800 0.36 -1.8
806,982 - PGA1_c07800 0.38 +0.5
807,032 - PGA1_c07800 0.43 -0.6
807,081 - PGA1_c07800 0.47 -2.1
807,264 + PGA1_c07800 0.65 +1.1
807,305 - PGA1_c07800 0.69 +0.9
807,322 + PGA1_c07800 0.71 +0.0
807,388 - PGA1_c07800 0.77 +0.0
807,434 - PGA1_c07800 0.82 -0.1
807,551 - +0.2
807,568 - +0.8
807,568 - -0.1
807,570 + -0.5
807,686 + +1.3
807,694 - +1.0
807,732 + +0.5
807,740 - +0.9
807,740 - +0.6
807,771 + +0.7
807,773 + -2.1
807,800 + -0.9
807,808 - +1.9
807,808 - +0.4
807,808 - -0.0
807,808 - -0.3
807,808 - +0.4
807,808 - -0.5
807,834 + +1.0
807,834 + -0.5
807,834 + -0.9
807,834 + -0.6
807,834 + -2.2
807,834 + -1.5
807,842 - +1.3
807,891 + +1.2
807,904 + +0.1
807,976 + +0.9
808,038 - PGA1_c07810 0.14 +1.6
808,041 + PGA1_c07810 0.14 -0.7
808,049 - PGA1_c07810 0.14 -0.5
808,049 - PGA1_c07810 0.14 -0.7
808,049 - PGA1_c07810 0.14 +0.1
808,077 + PGA1_c07810 0.16 -1.0
808,116 + PGA1_c07810 0.19 -0.7
808,116 + PGA1_c07810 0.19 -0.5
808,123 + PGA1_c07810 0.20 -1.5
808,131 - PGA1_c07810 0.20 +0.6
808,131 - PGA1_c07810 0.20 +1.1
808,133 + PGA1_c07810 0.20 -0.9
808,135 + PGA1_c07810 0.21 +1.2
808,142 - PGA1_c07810 0.21 +0.5
808,170 + PGA1_c07810 0.23 +0.9
808,189 - PGA1_c07810 0.25 +1.7
808,212 + PGA1_c07810 0.26 +0.1
808,246 - PGA1_c07810 0.29 -1.2
808,305 - PGA1_c07810 0.33 +0.1
808,312 + PGA1_c07810 0.33 +0.8
808,312 + PGA1_c07810 0.33 -0.9
808,320 - PGA1_c07810 0.34 +0.6
808,320 - PGA1_c07810 0.34 +0.5
808,320 - PGA1_c07810 0.34 +0.7
808,320 - PGA1_c07810 0.34 +1.8
808,325 - PGA1_c07810 0.34 +1.8
808,342 + PGA1_c07810 0.36 +1.9
808,350 - PGA1_c07810 0.36 +1.5
808,396 - PGA1_c07810 0.40 +1.9
808,420 + PGA1_c07810 0.41 +0.7
808,420 + PGA1_c07810 0.41 +0.1
808,441 + PGA1_c07810 0.43 -0.8
808,458 - PGA1_c07810 0.44 +0.3
808,507 - PGA1_c07810 0.48 -2.1
808,515 + PGA1_c07810 0.48 -0.5
808,533 + PGA1_c07810 0.50 +1.3
808,543 + PGA1_c07810 0.50 +0.5
808,631 + PGA1_c07810 0.57 +0.5
808,650 - PGA1_c07810 0.58 +0.5
808,722 + PGA1_c07810 0.63 -1.2
808,732 + PGA1_c07810 0.64 -0.2
808,732 + PGA1_c07810 0.64 +2.5
808,740 + PGA1_c07810 0.65 +2.4
808,794 + PGA1_c07810 0.69 +0.9
808,797 - PGA1_c07810 0.69 +1.6
808,818 + PGA1_c07810 0.70 -0.5
808,885 + PGA1_c07810 0.75 +1.7
808,886 + PGA1_c07810 0.75 +0.5
808,894 - PGA1_c07810 0.76 +0.5
808,894 - PGA1_c07810 0.76 +1.4
808,895 + PGA1_c07810 0.76 +1.5
808,955 - PGA1_c07810 0.80 -2.3
808,961 + PGA1_c07810 0.81 +0.8
809,002 - PGA1_c07810 0.84 +1.4
809,060 - PGA1_c07810 0.88 -0.8
809,088 + +2.4
809,096 - -1.7
809,096 - +0.8
809,101 - -2.6
809,119 - +0.5
809,125 + +0.4
809,173 - +0.5
809,173 - +1.4
809,195 - -1.1
809,214 + +3.4
809,214 + -1.1
809,214 + +2.1
809,214 + -0.7
809,214 + +0.3
809,269 + +0.7
809,269 + +0.6
809,269 + -2.3
809,269 + +0.7
809,270 - -0.5
809,277 - +0.5
809,277 - +1.3
809,279 + +0.5
809,318 - -0.3
809,369 + -0.1
809,382 - PGA1_c07820 0.10 -1.3
809,444 + PGA1_c07820 0.16 +2.1
809,484 - PGA1_c07820 0.19 -0.2
809,517 - PGA1_c07820 0.22 +0.1
809,517 - PGA1_c07820 0.22 +0.5
809,623 + PGA1_c07820 0.31 +1.4
809,658 + PGA1_c07820 0.34 +0.8
809,658 + PGA1_c07820 0.34 +1.3
809,716 - PGA1_c07820 0.38 +0.7
809,766 + PGA1_c07820 0.43 +0.4
809,766 + PGA1_c07820 0.43 +1.1
809,794 - PGA1_c07820 0.45 -0.2
809,796 + PGA1_c07820 0.45 +1.1
809,825 - PGA1_c07820 0.48 -0.5
809,825 - PGA1_c07820 0.48 +0.2
809,860 - PGA1_c07820 0.51 +2.7
809,889 + PGA1_c07820 0.53 +0.6
809,889 + PGA1_c07820 0.53 -0.4
809,897 - PGA1_c07820 0.54 +1.0
809,935 - PGA1_c07820 0.57 -0.3
809,945 - PGA1_c07820 0.58 -0.5
809,953 + PGA1_c07820 0.58 +0.4
810,110 - PGA1_c07820 0.72 -0.6
810,110 - PGA1_c07820 0.72 +0.8

Or see this region's nucleotide sequence