Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07670 and PGA1_c07680 are separated by 168 nucleotides PGA1_c07680 and PGA1_c07690 are separated by 54 nucleotides
PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633
_c07670
PGA1_c07680: PGA1_c07680 - N-acyl-L-homoserine lactone synthetase, at 796,802 to 797,410
_c07680
PGA1_c07690: PGA1_c07690 - (S)-mandelate dehydrogenase MdlB, at 797,465 to 798,556
_c07690
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 795.805 kb on + strand, within PGA1_c07670 at 795.805 kb on + strand, within PGA1_c07670 at 795.805 kb on + strand, within PGA1_c07670 at 795.815 kb on + strand, within PGA1_c07670 at 795.815 kb on + strand, within PGA1_c07670 at 795.815 kb on + strand, within PGA1_c07670 at 795.823 kb on - strand, within PGA1_c07670 at 795.823 kb on - strand, within PGA1_c07670 at 795.823 kb on - strand, within PGA1_c07670 at 795.823 kb on - strand, within PGA1_c07670 at 795.874 kb on + strand, within PGA1_c07670 at 795.874 kb on + strand, within PGA1_c07670 at 795.907 kb on + strand, within PGA1_c07670 at 795.907 kb on + strand, within PGA1_c07670 at 795.907 kb on + strand, within PGA1_c07670 at 795.973 kb on - strand, within PGA1_c07670 at 795.977 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.998 kb on - strand, within PGA1_c07670 at 795.998 kb on - strand, within PGA1_c07670 at 796.094 kb on - strand, within PGA1_c07670 at 796.188 kb on + strand, within PGA1_c07670 at 796.196 kb on - strand, within PGA1_c07670 at 796.196 kb on - strand, within PGA1_c07670 at 796.196 kb on - strand, within PGA1_c07670 at 796.196 kb on - strand, within PGA1_c07670 at 796.216 kb on + strand, within PGA1_c07670 at 796.232 kb on - strand, within PGA1_c07670 at 796.365 kb on + strand, within PGA1_c07670 at 796.365 kb on + strand, within PGA1_c07670 at 796.365 kb on + strand, within PGA1_c07670 at 796.373 kb on - strand, within PGA1_c07670 at 796.385 kb on + strand, within PGA1_c07670 at 796.442 kb on - strand, within PGA1_c07670 at 796.473 kb on - strand at 796.478 kb on + strand at 796.484 kb on + strand at 796.503 kb on - strand at 796.534 kb on + strand at 796.555 kb on + strand at 796.555 kb on + strand at 796.555 kb on + strand at 796.563 kb on - strand at 796.563 kb on - strand at 796.605 kb on + strand at 796.613 kb on - strand at 796.647 kb on + strand at 796.655 kb on - strand at 796.665 kb on - strand at 796.776 kb on + strand at 796.776 kb on + strand at 796.784 kb on - strand at 796.789 kb on + strand at 796.792 kb on - strand at 796.794 kb on + strand at 796.794 kb on + strand at 796.797 kb on - strand at 796.802 kb on - strand at 796.802 kb on - strand at 796.802 kb on - strand at 796.830 kb on + strand at 796.838 kb on - strand at 796.840 kb on + strand at 796.840 kb on + strand at 796.842 kb on + strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.857 kb on - strand at 796.857 kb on - strand at 796.861 kb on + strand at 796.867 kb on - strand, within PGA1_c07680 at 796.884 kb on + strand, within PGA1_c07680 at 796.884 kb on - strand, within PGA1_c07680 at 796.910 kb on - strand, within PGA1_c07680 at 796.911 kb on + strand, within PGA1_c07680 at 796.911 kb on + strand, within PGA1_c07680 at 796.940 kb on - strand, within PGA1_c07680 at 796.950 kb on - strand, within PGA1_c07680 at 796.963 kb on + strand, within PGA1_c07680 at 796.971 kb on - strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.071 kb on - strand, within PGA1_c07680 at 797.096 kb on + strand, within PGA1_c07680 at 797.096 kb on + strand, within PGA1_c07680 at 797.114 kb on + strand, within PGA1_c07680 at 797.119 kb on - strand, within PGA1_c07680 at 797.127 kb on - strand, within PGA1_c07680 at 797.154 kb on - strand, within PGA1_c07680 at 797.163 kb on + strand, within PGA1_c07680 at 797.163 kb on + strand, within PGA1_c07680 at 797.169 kb on + strand, within PGA1_c07680 at 797.169 kb on - strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.196 kb on + strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.219 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.274 kb on - strand, within PGA1_c07680 at 797.274 kb on - strand, within PGA1_c07680 at 797.292 kb on + strand, within PGA1_c07680 at 797.300 kb on - strand, within PGA1_c07680 at 797.321 kb on - strand, within PGA1_c07680 at 797.325 kb on + strand, within PGA1_c07680 at 797.333 kb on - strand, within PGA1_c07680 at 797.370 kb on - strand at 797.405 kb on + strand at 797.405 kb on + strand at 797.405 kb on + strand at 797.413 kb on - strand at 797.413 kb on - strand at 797.413 kb on - strand at 797.464 kb on + strand at 797.469 kb on - strand at 797.469 kb on - strand at 797.498 kb on - strand at 797.512 kb on + strand at 797.512 kb on + strand at 797.512 kb on + strand at 797.529 kb on + strand at 797.529 kb on + strand at 797.529 kb on + strand at 797.534 kb on + strand at 797.537 kb on - strand at 797.539 kb on - strand at 797.550 kb on + strand at 797.566 kb on - strand at 797.581 kb on + strand, within PGA1_c07690 at 797.605 kb on - strand, within PGA1_c07690 at 797.624 kb on - strand, within PGA1_c07690 at 797.641 kb on - strand, within PGA1_c07690 at 797.738 kb on - strand, within PGA1_c07690 at 797.781 kb on + strand, within PGA1_c07690 at 797.791 kb on + strand, within PGA1_c07690 at 797.949 kb on + strand, within PGA1_c07690 at 797.951 kb on - strand, within PGA1_c07690 at 797.957 kb on - strand, within PGA1_c07690 at 797.957 kb on - strand, within PGA1_c07690 at 797.965 kb on + strand, within PGA1_c07690 at 797.965 kb on + strand, within PGA1_c07690 at 797.965 kb on + strand, within PGA1_c07690 at 797.973 kb on - strand, within PGA1_c07690 at 797.988 kb on - strand, within PGA1_c07690 at 798.037 kb on - strand, within PGA1_c07690 at 798.038 kb on + strand, within PGA1_c07690 at 798.078 kb on + strand, within PGA1_c07690 at 798.138 kb on - strand, within PGA1_c07690 at 798.148 kb on + strand, within PGA1_c07690 at 798.182 kb on + strand, within PGA1_c07690 at 798.184 kb on - strand, within PGA1_c07690 at 798.184 kb on - strand, within PGA1_c07690 at 798.190 kb on - strand, within PGA1_c07690 at 798.305 kb on + strand, within PGA1_c07690 at 798.364 kb on + strand, within PGA1_c07690
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 795,805 + PGA1_c07670 0.52 +0.3 795,805 + PGA1_c07670 0.52 -1.1 795,805 + PGA1_c07670 0.52 -0.4 795,815 + PGA1_c07670 0.53 +1.1 795,815 + PGA1_c07670 0.53 -0.7 795,815 + PGA1_c07670 0.53 -0.2 795,823 - PGA1_c07670 0.53 +1.0 795,823 - PGA1_c07670 0.53 +0.1 795,823 - PGA1_c07670 0.53 +1.5 795,823 - PGA1_c07670 0.53 +0.1 795,874 + PGA1_c07670 0.56 -0.3 795,874 + PGA1_c07670 0.56 +0.1 795,907 + PGA1_c07670 0.58 +0.1 795,907 + PGA1_c07670 0.58 +2.2 795,907 + PGA1_c07670 0.58 +1.7 795,973 - PGA1_c07670 0.62 +1.3 795,977 + PGA1_c07670 0.62 +0.8 795,990 + PGA1_c07670 0.63 -0.0 795,990 + PGA1_c07670 0.63 +1.3 795,990 + PGA1_c07670 0.63 -2.5 795,990 + PGA1_c07670 0.63 -1.3 795,990 + PGA1_c07670 0.63 +1.1 795,990 + PGA1_c07670 0.63 -1.2 795,998 - PGA1_c07670 0.64 -0.3 795,998 - PGA1_c07670 0.64 +1.0 796,094 - PGA1_c07670 0.69 -0.5 796,188 + PGA1_c07670 0.74 -2.7 796,196 - PGA1_c07670 0.75 -0.5 796,196 - PGA1_c07670 0.75 -0.1 796,196 - PGA1_c07670 0.75 +2.4 796,196 - PGA1_c07670 0.75 +0.6 796,216 + PGA1_c07670 0.76 +0.1 796,232 - PGA1_c07670 0.77 +0.1 796,365 + PGA1_c07670 0.85 +0.5 796,365 + PGA1_c07670 0.85 +0.5 796,365 + PGA1_c07670 0.85 +1.4 796,373 - PGA1_c07670 0.85 +2.7 796,385 + PGA1_c07670 0.86 +0.3 796,442 - PGA1_c07670 0.89 -0.3 796,473 - -0.1 796,478 + +3.3 796,484 + +2.4 796,503 - +0.9 796,534 + +1.1 796,555 + +0.4 796,555 + +0.7 796,555 + +0.7 796,563 - +0.2 796,563 - -0.5 796,605 + +1.8 796,613 - +0.3 796,647 + -0.5 796,655 - +0.3 796,665 - -1.0 796,776 + +0.5 796,776 + -1.3 796,784 - +1.1 796,789 + +1.6 796,792 - +0.1 796,794 + +1.3 796,794 + -1.2 796,797 - -0.2 796,802 - +0.3 796,802 - +0.1 796,802 - -0.1 796,830 + +0.9 796,838 - +0.5 796,840 + -0.2 796,840 + +0.9 796,842 + +1.1 796,850 - +1.7 796,850 - +1.2 796,850 - -0.2 796,850 - +0.4 796,857 - -1.5 796,857 - +0.6 796,861 + -0.8 796,867 - PGA1_c07680 0.11 +0.4 796,884 + PGA1_c07680 0.13 -0.6 796,884 - PGA1_c07680 0.13 -0.4 796,910 - PGA1_c07680 0.18 +1.5 796,911 + PGA1_c07680 0.18 +1.4 796,911 + PGA1_c07680 0.18 +0.1 796,940 - PGA1_c07680 0.23 +2.1 796,950 - PGA1_c07680 0.24 -0.1 796,963 + PGA1_c07680 0.26 +2.1 796,971 - PGA1_c07680 0.28 -1.1 797,029 + PGA1_c07680 0.37 +1.1 797,029 + PGA1_c07680 0.37 +0.3 797,029 + PGA1_c07680 0.37 +1.6 797,029 + PGA1_c07680 0.37 -0.2 797,029 + PGA1_c07680 0.37 +0.9 797,029 + PGA1_c07680 0.37 -1.4 797,029 + PGA1_c07680 0.37 -2.1 797,029 + PGA1_c07680 0.37 -1.9 797,029 + PGA1_c07680 0.37 -1.4 797,029 + PGA1_c07680 0.37 -0.7 797,037 - PGA1_c07680 0.39 +0.3 797,037 - PGA1_c07680 0.39 -0.6 797,037 - PGA1_c07680 0.39 +0.8 797,037 - PGA1_c07680 0.39 +1.7 797,037 - PGA1_c07680 0.39 -0.3 797,043 + PGA1_c07680 0.40 +0.7 797,043 + PGA1_c07680 0.40 +0.7 797,043 + PGA1_c07680 0.40 +0.8 797,043 + PGA1_c07680 0.40 +0.1 797,043 + PGA1_c07680 0.40 +0.1 797,043 + PGA1_c07680 0.40 +2.1 797,043 + PGA1_c07680 0.40 +0.5 797,051 - PGA1_c07680 0.41 +0.5 797,051 - PGA1_c07680 0.41 -0.2 797,051 - PGA1_c07680 0.41 +0.4 797,071 - PGA1_c07680 0.44 +0.7 797,096 + PGA1_c07680 0.48 +0.1 797,096 + PGA1_c07680 0.48 +0.9 797,114 + PGA1_c07680 0.51 +0.2 797,119 - PGA1_c07680 0.52 +0.9 797,127 - PGA1_c07680 0.53 +1.1 797,154 - PGA1_c07680 0.58 -0.3 797,163 + PGA1_c07680 0.59 +1.1 797,163 + PGA1_c07680 0.59 -0.9 797,169 + PGA1_c07680 0.60 +0.4 797,169 - PGA1_c07680 0.60 -0.8 797,181 + PGA1_c07680 0.62 -0.6 797,181 + PGA1_c07680 0.62 +2.1 797,181 + PGA1_c07680 0.62 +0.1 797,196 + PGA1_c07680 0.65 +0.4 797,206 - PGA1_c07680 0.66 -0.5 797,206 - PGA1_c07680 0.66 +1.2 797,206 - PGA1_c07680 0.66 +0.8 797,215 + PGA1_c07680 0.68 +0.5 797,215 + PGA1_c07680 0.68 -1.0 797,215 + PGA1_c07680 0.68 +1.4 797,215 + PGA1_c07680 0.68 -0.9 797,215 + PGA1_c07680 0.68 -1.1 797,215 + PGA1_c07680 0.68 +2.1 797,215 + PGA1_c07680 0.68 +0.1 797,215 + PGA1_c07680 0.68 +1.5 797,215 + PGA1_c07680 0.68 +2.1 797,215 + PGA1_c07680 0.68 +0.2 797,219 - PGA1_c07680 0.68 +0.7 797,223 - PGA1_c07680 0.69 +0.6 797,223 - PGA1_c07680 0.69 +1.1 797,223 - PGA1_c07680 0.69 +2.5 797,274 - PGA1_c07680 0.78 -0.3 797,274 - PGA1_c07680 0.78 -0.0 797,292 + PGA1_c07680 0.80 +1.1 797,300 - PGA1_c07680 0.82 +1.4 797,321 - PGA1_c07680 0.85 +1.0 797,325 + PGA1_c07680 0.86 -0.0 797,333 - PGA1_c07680 0.87 +0.6 797,370 - +0.2 797,405 + +0.9 797,405 + +0.7 797,405 + -0.3 797,413 - +0.4 797,413 - -0.3 797,413 - +0.6 797,464 + +1.1 797,469 - +1.3 797,469 - -1.9 797,498 - -0.0 797,512 + +1.5 797,512 + +2.8 797,512 + +1.1 797,529 + +0.6 797,529 + +1.1 797,529 + +0.9 797,534 + -1.2 797,537 - -1.0 797,539 - +0.5 797,550 + +1.1 797,566 - +0.3 797,581 + PGA1_c07690 0.11 -0.2 797,605 - PGA1_c07690 0.13 -1.1 797,624 - PGA1_c07690 0.15 +0.1 797,641 - PGA1_c07690 0.16 +0.4 797,738 - PGA1_c07690 0.25 +0.9 797,781 + PGA1_c07690 0.29 +0.7 797,791 + PGA1_c07690 0.30 -1.5 797,949 + PGA1_c07690 0.44 +2.3 797,951 - PGA1_c07690 0.45 +1.3 797,957 - PGA1_c07690 0.45 +1.3 797,957 - PGA1_c07690 0.45 +0.5 797,965 + PGA1_c07690 0.46 +0.5 797,965 + PGA1_c07690 0.46 -0.1 797,965 + PGA1_c07690 0.46 -0.2 797,973 - PGA1_c07690 0.47 +2.4 797,988 - PGA1_c07690 0.48 -0.5 798,037 - PGA1_c07690 0.52 +1.6 798,038 + PGA1_c07690 0.52 -0.0 798,078 + PGA1_c07690 0.56 +1.4 798,138 - PGA1_c07690 0.62 +0.8 798,148 + PGA1_c07690 0.63 +0.1 798,182 + PGA1_c07690 0.66 +0.1 798,184 - PGA1_c07690 0.66 +0.3 798,184 - PGA1_c07690 0.66 +1.0 798,190 - PGA1_c07690 0.66 +0.4 798,305 + PGA1_c07690 0.77 +0.3 798,364 + PGA1_c07690 0.82 +1.1
Or see this region's nucleotide sequence