Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05590 and PGA1_c05600 are separated by 261 nucleotides PGA1_c05600 and PGA1_c05610 overlap by 1 nucleotides
PGA1_c05590: PGA1_c05590 - acyl-CoA dehydrogenase-like protein, at 572,698 to 573,936
_c05590
PGA1_c05600: PGA1_c05600 - queuosine biosynthesis protein QueC, at 574,198 to 574,896
_c05600
PGA1_c05610: PGA1_c05610 - putative queuosine biosynthesis protein QueD, at 574,896 to 575,249
_c05610
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 571.706 kb on + strand at 571.706 kb on + strand at 571.714 kb on - strand at 571.714 kb on - strand at 571.714 kb on - strand at 571.738 kb on + strand at 571.748 kb on + strand at 571.751 kb on - strand at 571.751 kb on - strand at 571.783 kb on + strand at 571.783 kb on + strand at 571.791 kb on - strand at 571.928 kb on + strand at 571.934 kb on - strand at 571.934 kb on - strand at 571.977 kb on - strand at 571.984 kb on + strand at 571.984 kb on + strand at 571.989 kb on + strand at 571.990 kb on + strand at 571.997 kb on - strand at 572.045 kb on + strand at 572.064 kb on - strand at 572.064 kb on - strand at 572.109 kb on - strand at 572.132 kb on - strand at 572.167 kb on - strand at 572.209 kb on - strand at 572.229 kb on + strand at 572.311 kb on + strand at 572.321 kb on - strand at 572.330 kb on - strand at 572.370 kb on + strand at 572.370 kb on + strand at 572.379 kb on - strand at 572.425 kb on - strand at 572.425 kb on - strand at 572.463 kb on + strand at 572.465 kb on + strand at 572.505 kb on + strand at 572.517 kb on - strand at 572.600 kb on - strand at 572.630 kb on + strand at 572.630 kb on + strand at 572.709 kb on - strand at 572.737 kb on + strand at 572.737 kb on + strand at 572.737 kb on + strand at 572.737 kb on + strand at 572.737 kb on + strand at 572.874 kb on + strand, within PGA1_c05590 at 572.880 kb on + strand, within PGA1_c05590 at 572.890 kb on - strand, within PGA1_c05590 at 572.931 kb on + strand, within PGA1_c05590 at 572.987 kb on + strand, within PGA1_c05590 at 572.995 kb on + strand, within PGA1_c05590 at 572.995 kb on - strand, within PGA1_c05590 at 572.995 kb on - strand, within PGA1_c05590 at 572.995 kb on - strand, within PGA1_c05590 at 573.003 kb on - strand, within PGA1_c05590 at 573.018 kb on - strand, within PGA1_c05590 at 573.043 kb on + strand, within PGA1_c05590 at 573.058 kb on - strand, within PGA1_c05590 at 573.088 kb on - strand, within PGA1_c05590 at 573.094 kb on + strand, within PGA1_c05590 at 573.160 kb on + strand, within PGA1_c05590 at 573.160 kb on + strand, within PGA1_c05590 at 573.181 kb on + strand, within PGA1_c05590 at 573.247 kb on + strand, within PGA1_c05590 at 573.361 kb on - strand, within PGA1_c05590 at 573.389 kb on + strand, within PGA1_c05590 at 573.390 kb on - strand, within PGA1_c05590 at 573.407 kb on + strand, within PGA1_c05590 at 573.407 kb on + strand, within PGA1_c05590 at 573.415 kb on - strand, within PGA1_c05590 at 573.430 kb on + strand, within PGA1_c05590 at 573.430 kb on + strand, within PGA1_c05590 at 573.430 kb on + strand, within PGA1_c05590 at 573.430 kb on + strand, within PGA1_c05590 at 573.482 kb on - strand, within PGA1_c05590 at 573.487 kb on - strand, within PGA1_c05590 at 573.525 kb on + strand, within PGA1_c05590 at 573.544 kb on - strand, within PGA1_c05590 at 573.662 kb on + strand, within PGA1_c05590 at 573.704 kb on + strand, within PGA1_c05590 at 573.706 kb on + strand, within PGA1_c05590 at 573.720 kb on - strand, within PGA1_c05590 at 573.726 kb on + strand, within PGA1_c05590 at 573.734 kb on - strand, within PGA1_c05590 at 573.734 kb on - strand, within PGA1_c05590 at 573.739 kb on + strand, within PGA1_c05590 at 573.760 kb on - strand, within PGA1_c05590 at 573.783 kb on - strand, within PGA1_c05590 at 573.825 kb on + strand at 573.825 kb on + strand at 573.833 kb on - strand at 573.833 kb on - strand at 573.833 kb on - strand at 573.834 kb on - strand at 573.864 kb on + strand at 573.879 kb on + strand at 573.918 kb on - strand at 573.999 kb on + strand at 573.999 kb on + strand at 573.999 kb on + strand at 574.007 kb on - strand at 574.025 kb on - strand at 574.080 kb on + strand at 574.080 kb on + strand at 574.088 kb on - strand at 574.088 kb on - strand at 574.088 kb on - strand at 574.088 kb on - strand at 574.093 kb on - strand at 574.094 kb on - strand at 574.094 kb on - strand at 574.135 kb on - strand at 574.152 kb on + strand at 574.153 kb on - strand at 574.215 kb on - strand at 574.215 kb on - strand at 574.272 kb on + strand, within PGA1_c05600 at 574.295 kb on + strand, within PGA1_c05600 at 574.295 kb on + strand, within PGA1_c05600 at 574.295 kb on + strand, within PGA1_c05600 at 574.357 kb on - strand, within PGA1_c05600 at 574.448 kb on + strand, within PGA1_c05600 at 574.451 kb on - strand, within PGA1_c05600 at 574.467 kb on + strand, within PGA1_c05600 at 574.467 kb on + strand, within PGA1_c05600 at 574.467 kb on + strand, within PGA1_c05600 at 574.474 kb on + strand, within PGA1_c05600 at 574.475 kb on - strand, within PGA1_c05600 at 574.475 kb on - strand, within PGA1_c05600 at 574.475 kb on - strand, within PGA1_c05600 at 574.475 kb on - strand, within PGA1_c05600 at 574.533 kb on + strand, within PGA1_c05600 at 574.533 kb on + strand, within PGA1_c05600 at 574.566 kb on - strand, within PGA1_c05600 at 574.582 kb on + strand, within PGA1_c05600 at 574.600 kb on + strand, within PGA1_c05600 at 574.604 kb on + strand, within PGA1_c05600 at 574.657 kb on - strand, within PGA1_c05600 at 574.672 kb on + strand, within PGA1_c05600 at 574.693 kb on + strand, within PGA1_c05600 at 574.760 kb on - strand, within PGA1_c05600 at 574.768 kb on + strand, within PGA1_c05600 at 574.803 kb on + strand, within PGA1_c05600 at 574.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 571,706 + -0.4 571,706 + -0.5 571,714 - +0.3 571,714 - +0.9 571,714 - +0.4 571,738 + +0.3 571,748 + +1.3 571,751 - +0.4 571,751 - +1.9 571,783 + +2.9 571,783 + -1.1 571,791 - +0.9 571,928 + -0.3 571,934 - +1.5 571,934 - -0.1 571,977 - +0.2 571,984 + +1.8 571,984 + +1.4 571,989 + -0.7 571,990 + +1.9 571,997 - -2.4 572,045 + +0.1 572,064 - +0.6 572,064 - +1.0 572,109 - +0.9 572,132 - +2.1 572,167 - -0.3 572,209 - +1.0 572,229 + -0.8 572,311 + -0.2 572,321 - -2.4 572,330 - +1.3 572,370 + +0.1 572,370 + +1.4 572,379 - +0.4 572,425 - +0.3 572,425 - +0.7 572,463 + +1.8 572,465 + -0.3 572,505 + +0.1 572,517 - -0.0 572,600 - -0.5 572,630 + +0.1 572,630 + +0.4 572,709 - +0.6 572,737 + +0.3 572,737 + +1.8 572,737 + +0.9 572,737 + +1.2 572,737 + +1.3 572,874 + PGA1_c05590 0.14 -1.3 572,880 + PGA1_c05590 0.15 -1.3 572,890 - PGA1_c05590 0.15 +0.1 572,931 + PGA1_c05590 0.19 -1.9 572,987 + PGA1_c05590 0.23 -1.5 572,995 + PGA1_c05590 0.24 +2.2 572,995 - PGA1_c05590 0.24 +0.9 572,995 - PGA1_c05590 0.24 +0.5 572,995 - PGA1_c05590 0.24 -3.0 573,003 - PGA1_c05590 0.25 -0.3 573,018 - PGA1_c05590 0.26 +0.3 573,043 + PGA1_c05590 0.28 -0.6 573,058 - PGA1_c05590 0.29 -0.6 573,088 - PGA1_c05590 0.31 -0.7 573,094 + PGA1_c05590 0.32 +0.3 573,160 + PGA1_c05590 0.37 +0.8 573,160 + PGA1_c05590 0.37 +1.8 573,181 + PGA1_c05590 0.39 -2.3 573,247 + PGA1_c05590 0.44 -0.6 573,361 - PGA1_c05590 0.54 +0.3 573,389 + PGA1_c05590 0.56 +0.9 573,390 - PGA1_c05590 0.56 -0.7 573,407 + PGA1_c05590 0.57 -0.8 573,407 + PGA1_c05590 0.57 +1.3 573,415 - PGA1_c05590 0.58 +1.2 573,430 + PGA1_c05590 0.59 +0.6 573,430 + PGA1_c05590 0.59 -0.5 573,430 + PGA1_c05590 0.59 +0.6 573,430 + PGA1_c05590 0.59 +1.3 573,482 - PGA1_c05590 0.63 +0.1 573,487 - PGA1_c05590 0.64 +0.9 573,525 + PGA1_c05590 0.67 +0.1 573,544 - PGA1_c05590 0.68 +1.3 573,662 + PGA1_c05590 0.78 -0.9 573,704 + PGA1_c05590 0.81 -0.0 573,706 + PGA1_c05590 0.81 -2.7 573,720 - PGA1_c05590 0.82 +0.8 573,726 + PGA1_c05590 0.83 +0.4 573,734 - PGA1_c05590 0.84 +0.9 573,734 - PGA1_c05590 0.84 +0.9 573,739 + PGA1_c05590 0.84 +0.9 573,760 - PGA1_c05590 0.86 -0.1 573,783 - PGA1_c05590 0.88 +0.4 573,825 + +2.5 573,825 + +1.3 573,833 - +1.4 573,833 - +3.1 573,833 - +0.7 573,834 - +1.4 573,864 + +1.2 573,879 + +0.5 573,918 - +0.4 573,999 + +1.3 573,999 + -0.0 573,999 + +0.1 574,007 - -0.1 574,025 - +0.5 574,080 + +0.8 574,080 + +0.1 574,088 - +0.3 574,088 - +1.3 574,088 - +0.3 574,088 - +0.3 574,093 - +1.5 574,094 - -0.7 574,094 - +0.2 574,135 - +0.0 574,152 + +3.0 574,153 - +1.5 574,215 - -0.3 574,215 - -1.2 574,272 + PGA1_c05600 0.11 +1.7 574,295 + PGA1_c05600 0.14 +0.5 574,295 + PGA1_c05600 0.14 -0.6 574,295 + PGA1_c05600 0.14 +1.1 574,357 - PGA1_c05600 0.23 +1.1 574,448 + PGA1_c05600 0.36 -0.1 574,451 - PGA1_c05600 0.36 -1.1 574,467 + PGA1_c05600 0.38 -0.8 574,467 + PGA1_c05600 0.38 +0.8 574,467 + PGA1_c05600 0.38 +0.1 574,474 + PGA1_c05600 0.39 -2.5 574,475 - PGA1_c05600 0.40 +1.1 574,475 - PGA1_c05600 0.40 -0.9 574,475 - PGA1_c05600 0.40 +0.9 574,475 - PGA1_c05600 0.40 +0.9 574,533 + PGA1_c05600 0.48 +0.9 574,533 + PGA1_c05600 0.48 +1.1 574,566 - PGA1_c05600 0.53 +1.4 574,582 + PGA1_c05600 0.55 -0.0 574,600 + PGA1_c05600 0.58 +1.6 574,604 + PGA1_c05600 0.58 +1.1 574,657 - PGA1_c05600 0.66 +0.9 574,672 + PGA1_c05600 0.68 -0.1 574,693 + PGA1_c05600 0.71 +0.8 574,760 - PGA1_c05600 0.80 +1.3 574,768 + PGA1_c05600 0.82 +1.3 574,803 + PGA1_c05600 0.87 +1.0 574,852 + -0.2
Or see this region's nucleotide sequence