Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0052

Experiment: perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0049 and Psest_0050 are separated by 155 nucleotidesPsest_0050 and Psest_0051 are separated by 193 nucleotidesPsest_0051 and Psest_0052 are separated by 10 nucleotidesPsest_0052 and Psest_0053 are separated by 167 nucleotidesPsest_0053 and Psest_0054 are separated by 86 nucleotides Psest_0049: Psest_0049 - Uncharacterized conserved protein, at 52,951 to 53,556 _0049 Psest_0050: Psest_0050 - Predicted acetyltransferase, at 53,712 to 53,993 _0050 Psest_0051: Psest_0051 - hypothetical protein, at 54,187 to 54,516 _0051 Psest_0052: Psest_0052 - hypothetical protein, at 54,527 to 55,279 _0052 Psest_0053: Psest_0053 - hypothetical protein, at 55,447 to 55,950 _0053 Psest_0054: Psest_0054 - hypothetical protein, at 56,037 to 56,429 _0054 Position (kb) 54 55 56Strain fitness (log2 ratio) -1 0 1 2 3at 53.596 kb on - strandat 53.659 kb on + strandat 53.659 kb on + strandat 53.659 kb on + strandat 53.660 kb on - strandat 53.660 kb on - strandat 53.676 kb on + strandat 53.676 kb on + strandat 53.676 kb on + strandat 53.677 kb on - strandat 53.761 kb on - strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.999 kb on - strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.020 kb on - strandat 54.040 kb on + strandat 54.041 kb on - strandat 54.134 kb on - strandat 54.218 kb on + strandat 54.219 kb on - strandat 54.276 kb on + strand, within Psest_0051at 54.276 kb on + strand, within Psest_0051at 54.277 kb on - strand, within Psest_0051at 54.277 kb on - strand, within Psest_0051at 54.277 kb on - strand, within Psest_0051at 54.277 kb on - strand, within Psest_0051at 54.433 kb on + strand, within Psest_0051at 54.433 kb on + strand, within Psest_0051at 54.433 kb on + strand, within Psest_0051at 54.433 kb on + strand, within Psest_0051at 54.434 kb on - strand, within Psest_0051at 54.434 kb on - strand, within Psest_0051at 54.434 kb on - strand, within Psest_0051at 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.489 kb on - strandat 54.489 kb on - strandat 54.735 kb on + strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.780 kb on + strand, within Psest_0052at 54.803 kb on + strand, within Psest_0052at 54.825 kb on + strand, within Psest_0052at 54.825 kb on + strand, within Psest_0052at 54.825 kb on + strand, within Psest_0052at 54.831 kb on + strand, within Psest_0052at 54.831 kb on + strand, within Psest_0052at 54.831 kb on + strand, within Psest_0052at 54.831 kb on + strand, within Psest_0052at 54.832 kb on - strand, within Psest_0052at 54.832 kb on - strand, within Psest_0052at 54.832 kb on - strand, within Psest_0052at 54.832 kb on - strand, within Psest_0052at 54.862 kb on - strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.034 kb on + strand, within Psest_0052at 55.065 kb on + strand, within Psest_0052at 55.065 kb on + strand, within Psest_0052at 55.066 kb on - strand, within Psest_0052at 55.066 kb on - strand, within Psest_0052at 55.168 kb on - strand, within Psest_0052at 55.199 kb on + strand, within Psest_0052at 55.200 kb on - strand, within Psest_0052at 55.200 kb on - strand, within Psest_0052at 55.264 kb on - strandat 55.306 kb on + strandat 55.313 kb on - strandat 55.313 kb on - strandat 55.421 kb on - strandat 55.424 kb on - strandat 55.424 kb on - strandat 55.424 kb on - strandat 55.834 kb on + strand, within Psest_0053at 56.182 kb on + strand, within Psest_0054at 56.183 kb on - strand, within Psest_0054at 56.183 kb on - strand, within Psest_0054at 56.200 kb on + strand, within Psest_0054at 56.201 kb on - strand, within Psest_0054at 56.248 kb on + strand, within Psest_0054at 56.249 kb on - strand, within Psest_0054at 56.249 kb on - strand, within Psest_0054

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 25 mM
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53,596 - -0.2
53,659 + +0.1
53,659 + +0.5
53,659 + -0.5
53,660 - +0.1
53,660 - +0.3
53,676 + +0.4
53,676 + +1.6
53,676 + +0.1
53,677 - +1.3
53,761 - Psest_0050 0.17 -0.3
53,946 + Psest_0050 0.83 +1.8
53,946 + Psest_0050 0.83 -0.3
53,946 + Psest_0050 0.83 -0.3
53,946 + Psest_0050 0.83 +0.4
53,946 + Psest_0050 0.83 +0.5
53,947 - Psest_0050 0.83 +0.4
53,947 - Psest_0050 0.83 +0.3
53,947 - Psest_0050 0.83 +1.1
53,947 - Psest_0050 0.83 -0.3
53,947 - Psest_0050 0.83 +0.8
53,999 - -0.6
54,019 + +0.6
54,019 + +0.5
54,019 + -0.3
54,019 + -0.6
54,019 + -0.7
54,019 + +0.2
54,020 - +0.3
54,040 + -0.1
54,041 - +0.3
54,134 - +0.7
54,218 + -1.3
54,219 - -0.3
54,276 + Psest_0051 0.27 +0.4
54,276 + Psest_0051 0.27 +0.7
54,277 - Psest_0051 0.27 +1.0
54,277 - Psest_0051 0.27 -0.3
54,277 - Psest_0051 0.27 +1.3
54,277 - Psest_0051 0.27 +0.5
54,433 + Psest_0051 0.75 -0.2
54,433 + Psest_0051 0.75 +0.0
54,433 + Psest_0051 0.75 +0.7
54,433 + Psest_0051 0.75 +1.3
54,434 - Psest_0051 0.75 +0.3
54,434 - Psest_0051 0.75 +0.9
54,434 - Psest_0051 0.75 -0.3
54,488 + +2.3
54,488 + +0.8
54,488 + +0.7
54,488 + +0.8
54,488 + +1.0
54,489 - +0.8
54,489 - +1.0
54,735 + Psest_0052 0.28 +1.3
54,736 - Psest_0052 0.28 +0.4
54,736 - Psest_0052 0.28 +0.6
54,736 - Psest_0052 0.28 -0.6
54,736 - Psest_0052 0.28 +0.3
54,736 - Psest_0052 0.28 +0.1
54,780 + Psest_0052 0.34 +0.3
54,803 + Psest_0052 0.37 +0.7
54,825 + Psest_0052 0.40 +3.3
54,825 + Psest_0052 0.40 +0.8
54,825 + Psest_0052 0.40 -0.3
54,831 + Psest_0052 0.40 +0.9
54,831 + Psest_0052 0.40 +0.3
54,831 + Psest_0052 0.40 -1.3
54,831 + Psest_0052 0.40 +1.3
54,832 - Psest_0052 0.41 -0.3
54,832 - Psest_0052 0.41 +3.3
54,832 - Psest_0052 0.41 +2.1
54,832 - Psest_0052 0.41 +0.7
54,862 - Psest_0052 0.44 +0.8
54,999 + Psest_0052 0.63 +0.7
54,999 + Psest_0052 0.63 +2.8
54,999 + Psest_0052 0.63 +0.5
54,999 + Psest_0052 0.63 +1.9
54,999 + Psest_0052 0.63 +1.3
54,999 + Psest_0052 0.63 +0.6
54,999 + Psest_0052 0.63 +2.3
54,999 + Psest_0052 0.63 +1.3
54,999 + Psest_0052 0.63 +0.5
54,999 + Psest_0052 0.63 +0.6
55,000 - Psest_0052 0.63 +0.7
55,000 - Psest_0052 0.63 -0.6
55,000 - Psest_0052 0.63 -0.2
55,000 - Psest_0052 0.63 +0.7
55,000 - Psest_0052 0.63 +1.8
55,000 - Psest_0052 0.63 +0.4
55,000 - Psest_0052 0.63 +0.3
55,000 - Psest_0052 0.63 +0.1
55,000 - Psest_0052 0.63 +2.0
55,000 - Psest_0052 0.63 +0.8
55,034 + Psest_0052 0.67 +0.9
55,065 + Psest_0052 0.71 +0.9
55,065 + Psest_0052 0.71 +1.8
55,066 - Psest_0052 0.72 +2.1
55,066 - Psest_0052 0.72 +0.5
55,168 - Psest_0052 0.85 +0.6
55,199 + Psest_0052 0.89 +2.8
55,200 - Psest_0052 0.89 -0.5
55,200 - Psest_0052 0.89 -0.3
55,264 - -0.9
55,306 + +0.7
55,313 - -1.5
55,313 - +0.7
55,421 - -0.4
55,424 - +0.4
55,424 - +0.3
55,424 - +0.6
55,834 + Psest_0053 0.77 -1.1
56,182 + Psest_0054 0.37 +0.3
56,183 - Psest_0054 0.37 +1.3
56,183 - Psest_0054 0.37 +1.2
56,200 + Psest_0054 0.41 +0.4
56,201 - Psest_0054 0.42 +0.3
56,248 + Psest_0054 0.54 +1.4
56,249 - Psest_0054 0.54 +1.0
56,249 - Psest_0054 0.54 +0.7

Or see this region's nucleotide sequence