Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29550

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,087,897	+				-0.1
3,087,905	-				-1.0
3,087,905	-				+0.7
3,087,910	-				-0.2
3,087,910	-				-1.2
3,087,910	-				+0.0
3,087,933	+				+0.2
3,087,933	+				-0.1
3,087,936	-				+0.2
3,087,941	-				+0.5
3,087,941	-				-0.6
3,087,941	-				+1.1
3,087,941	-				+0.2
3,088,081	+		PGA1_c29530	0.18	-2.5
3,088,101	+		PGA1_c29530	0.21	-1.8
3,088,116	+		PGA1_c29530	0.24	-1.7
3,088,116	+		PGA1_c29530	0.24	-0.6
3,088,116	+		PGA1_c29530	0.24	-2.1
3,088,124	-		PGA1_c29530	0.25	-0.7
3,088,124	-		PGA1_c29530	0.25	+0.1
3,088,167	+		PGA1_c29530	0.31	-1.3
3,088,167	+		PGA1_c29530	0.31	-1.8
3,088,175	-		PGA1_c29530	0.33	-1.1
3,088,175	-		PGA1_c29530	0.33	-0.3
3,088,261	-		PGA1_c29530	0.46	+1.1
3,088,266	-		PGA1_c29530	0.47	-2.1
3,088,310	+		PGA1_c29530	0.54	-0.4
3,088,315	+		PGA1_c29530	0.54	-0.8
3,088,315	+		PGA1_c29530	0.54	-1.2
3,088,350	+		PGA1_c29530	0.60	+0.2
3,088,352	-		PGA1_c29530	0.60	-0.2
3,088,439	-		PGA1_c29530	0.73	-1.6
3,088,450	+		PGA1_c29530	0.75	-2.6
3,088,452	+		PGA1_c29530	0.75	+0.4
3,088,458	-		PGA1_c29530	0.76	-0.5
3,088,468	-		PGA1_c29530	0.78	+1.1
3,088,502	+		PGA1_c29530	0.83	-1.8
3,088,502	+		PGA1_c29530	0.83	+0.4
3,088,507	+		PGA1_c29530	0.84	-0.6
3,088,510	-		PGA1_c29530	0.84	-0.8
3,088,510	-		PGA1_c29530	0.84	-2.1
3,088,510	-		PGA1_c29530	0.84	-1.7
3,088,510	-		PGA1_c29530	0.84	+1.4
3,088,515	-		PGA1_c29530	0.85	-0.7
3,088,515	-		PGA1_c29530	0.85	-1.2
3,088,525	+		PGA1_c29530	0.87	+1.0
3,088,543	+		PGA1_c29530	0.90	+0.6
3,088,569	-				-2.3
3,088,613	-				+1.0
3,088,643	-				+0.2
3,088,643	-				+0.4
3,088,650	-		PGA1_c29540	0.12	-0.3
3,088,671	+		PGA1_c29540	0.19	+1.0
3,088,679	-		PGA1_c29540	0.22	-0.1
3,088,699	+		PGA1_c29540	0.30	+0.5
3,088,709	+		PGA1_c29540	0.34	-0.6
3,088,713	+		PGA1_c29540	0.35	+0.1
3,088,762	-		PGA1_c29540	0.54	+0.5
3,088,931	+				-0.7
3,088,981	-				-0.8
3,089,031	-		PGA1_c29550	0.11	+0.1
3,089,040	+		PGA1_c29550	0.11	-1.8
3,089,045	+		PGA1_c29550	0.12	+0.2
3,089,045	+		PGA1_c29550	0.12	-0.1
3,089,045	+		PGA1_c29550	0.12	-0.8
3,089,053	-		PGA1_c29550	0.12	-1.3
3,089,053	-		PGA1_c29550	0.12	-0.0
3,089,136	+		PGA1_c29550	0.18	-0.1
3,089,144	-		PGA1_c29550	0.19	-1.2
3,089,144	-		PGA1_c29550	0.19	-2.3
3,089,191	-		PGA1_c29550	0.22	-1.0
3,089,192	+		PGA1_c29550	0.22	-0.2
3,089,192	+		PGA1_c29550	0.22	+0.2
3,089,291	+		PGA1_c29550	0.29	-1.8
3,089,307	+		PGA1_c29550	0.30	-0.4
3,089,316	-		PGA1_c29550	0.31	-1.0
3,089,372	+		PGA1_c29550	0.35	-1.3
3,089,409	+		PGA1_c29550	0.38	+0.7
3,089,417	-		PGA1_c29550	0.38	-1.1
3,089,486	+		PGA1_c29550	0.43	-1.3
3,089,490	+		PGA1_c29550	0.44	+0.2
3,089,498	-		PGA1_c29550	0.44	-0.8
3,089,525	+		PGA1_c29550	0.46	-0.9
3,089,530	+		PGA1_c29550	0.47	-0.4
3,089,530	+		PGA1_c29550	0.47	-1.6
3,089,530	+		PGA1_c29550	0.47	-0.3
3,089,538	-		PGA1_c29550	0.47	-0.4
3,089,554	+		PGA1_c29550	0.48	-0.6
3,089,590	+		PGA1_c29550	0.51	+0.1
3,089,590	+		PGA1_c29550	0.51	-3.0
3,089,595	+		PGA1_c29550	0.51	-0.3
3,089,602	+		PGA1_c29550	0.52	-0.8
3,089,603	-		PGA1_c29550	0.52	+1.2
3,089,685	-		PGA1_c29550	0.58	+0.4
3,089,782	-		PGA1_c29550	0.65	+0.5
3,089,782	-		PGA1_c29550	0.65	-0.9
3,089,834	-		PGA1_c29550	0.68	+0.6
3,089,834	-		PGA1_c29550	0.68	-0.2
3,089,846	+		PGA1_c29550	0.69	-0.8
3,089,846	+		PGA1_c29550	0.69	+2.2
3,089,846	+		PGA1_c29550	0.69	-1.8
3,089,846	+		PGA1_c29550	0.69	-1.8
3,089,846	+		PGA1_c29550	0.69	-2.7
3,089,854	-		PGA1_c29550	0.70	-0.4
3,089,854	-		PGA1_c29550	0.70	-1.2
3,089,854	-		PGA1_c29550	0.70	-1.1
3,089,872	-		PGA1_c29550	0.71	-1.5
3,089,872	-		PGA1_c29550	0.71	-0.2
3,089,872	-		PGA1_c29550	0.71	-2.5
3,090,001	+		PGA1_c29550	0.81	-0.5
3,090,033	+		PGA1_c29550	0.83	+0.2
3,090,033	+		PGA1_c29550	0.83	+0.0
3,090,038	+		PGA1_c29550	0.83	+0.1
3,090,046	-		PGA1_c29550	0.84	-0.8
3,090,048	-		PGA1_c29550	0.84	-0.9
3,090,048	-		PGA1_c29550	0.84	-2.6
3,090,061	+		PGA1_c29550	0.85	+0.9
3,090,061	+		PGA1_c29550	0.85	+0.2
3,090,061	+		PGA1_c29550	0.85	-0.8
3,090,066	+		PGA1_c29550	0.85	+0.2
3,090,069	-		PGA1_c29550	0.85	-1.8
3,090,092	+		PGA1_c29550	0.87	-0.1
3,090,092	+		PGA1_c29550	0.87	-0.2
3,090,092	+				-0.3
3,090,100	-		PGA1_c29550	0.88	+0.4
3,090,111	+		PGA1_c29550	0.88	-1.6
3,090,119	-		PGA1_c29550	0.89	-0.2
3,090,119	-		PGA1_c29550	0.89	+0.1
3,090,177	-				-2.8
3,090,199	+				-0.6
3,090,199	+				-0.7
3,090,201	+				+1.1
3,090,205	-				-0.5
3,090,207	+				+0.9
3,090,207	+				-1.8
3,090,207	+				+0.2
3,090,219	-				+0.7
3,090,241	+				+0.2
3,090,241	+				-0.7
3,090,241	+				-0.5
3,090,241	+				-0.3
3,090,241	+				+0.7
3,090,241	+				+0.4
3,090,249	-				+0.7
3,090,259	-				-1.4
3,090,267	+				-0.8
3,090,299	+				+0.7
3,090,299	+				-0.3
3,090,307	-				+0.5
3,090,307	-				+0.1
3,090,309	-				-1.5
3,090,309	-				-0.9
3,090,347	+				-0.0
3,090,347	+				+0.4
3,090,352	-				+0.7
3,090,394	-				+0.4
3,090,397	+				-0.0
3,090,418	+				-2.3
3,090,452	+				+0.2
3,090,476	+				+1.7
3,090,503	+				-0.6
3,090,503	+				+2.1
3,090,516	-				-1.6
3,090,540	-				+0.5
3,090,547	-				+0.9
3,090,560	+				+1.1
3,090,560	+				+1.5
3,090,565	+				+0.5
3,090,568	-				+0.9
3,090,573	-				-1.8
3,090,573	-				-1.7
3,090,575	-				+0.4
3,090,594	+				+0.3
3,090,594	+				-0.8
3,090,594	+				-0.9
3,090,602	-				+0.2
3,090,602	-				+0.8
3,090,602	-				-0.4
3,090,602	-				-0.6
3,090,626	+				+1.2
3,090,626	+				-1.0
3,090,634	-				+1.6
3,090,634	-				+0.5
3,090,634	-				+0.4
3,090,634	-				-1.1
3,090,634	-				+0.2
3,090,634	-				-0.5
3,090,634	-				-0.2
3,090,672	+				-2.5
3,090,672	+				+0.5
3,090,672	+				-1.3
3,090,672	+				-1.5
3,090,680	-				+0.4
3,090,680	-				-0.3
3,090,680	-				+0.4
3,090,680	-				-0.6
3,090,680	-				-0.2
3,090,685	-				+0.6
3,090,707	-				-0.6
3,090,755	+				-0.8
3,090,774	+				-1.0
3,090,826	+				-0.2
3,090,830	+				-2.5
3,090,839	+				-0.7
3,090,839	+				+0.2
3,090,839	-				-0.0
3,090,844	+				-0.5
3,090,854	+				-0.1
3,090,930	+		PGA1_c29560	0.20	+0.7
3,090,946	+		PGA1_c29560	0.25	+1.5
3,090,946	+		PGA1_c29560	0.25	+0.7
3,090,946	+		PGA1_c29560	0.25	-0.4
3,090,959	-		PGA1_c29560	0.28	-0.7
3,090,959	-		PGA1_c29560	0.28	+0.8
3,090,965	+		PGA1_c29560	0.30	-1.2
3,090,986	+		PGA1_c29560	0.36	+0.2
3,091,000	+		PGA1_c29560	0.40	-0.2
3,091,000	+		PGA1_c29560	0.40	-0.6
3,091,000	-		PGA1_c29560	0.40	-1.1
3,091,015	-		PGA1_c29560	0.45	-0.3
3,091,020	-		PGA1_c29560	0.46	-2.3
3,091,048	+		PGA1_c29560	0.54	-0.1
3,091,048	+		PGA1_c29560	0.54	-0.1
3,091,048	+		PGA1_c29560	0.54	-1.5
3,091,056	-		PGA1_c29560	0.57	+0.2
3,091,068	+		PGA1_c29560	0.60	-0.9
3,091,082	-		PGA1_c29560	0.64	+0.7
3,091,106	+		PGA1_c29560	0.71	-0.2
3,091,150	-		PGA1_c29560	0.84	-0.8
3,091,159	+		PGA1_c29560	0.86	+0.8
3,091,222	-				-0.0
3,091,224	-				+0.2