Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02870

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02860 and PGA1_c02870 are separated by 34 nucleotidesPGA1_c02870 and PGA1_c02880 are separated by 314 nucleotides PGA1_c02860: PGA1_c02860 - putative sodium/calcium exchanger protein, at 275,667 to 276,611 _c02860 PGA1_c02870: PGA1_c02870 - short chain dehydrogenase, at 276,646 to 277,422 _c02870 PGA1_c02880: PGA1_c02880 - uvrABC system protein C, at 277,737 to 279,626 _c02880 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 276.595 kb on - strandat 276.595 kb on - strandat 276.600 kb on - strandat 276.605 kb on + strandat 276.629 kb on + strandat 276.629 kb on + strandat 276.629 kb on + strandat 276.629 kb on + strandat 276.629 kb on + strandat 276.637 kb on - strandat 276.637 kb on - strandat 276.637 kb on - strandat 276.637 kb on - strandat 276.637 kb on - strandat 276.754 kb on - strand, within PGA1_c02870at 276.799 kb on + strand, within PGA1_c02870at 276.807 kb on - strand, within PGA1_c02870at 276.830 kb on - strand, within PGA1_c02870at 276.869 kb on + strand, within PGA1_c02870at 276.887 kb on + strand, within PGA1_c02870at 276.969 kb on - strand, within PGA1_c02870at 277.025 kb on - strand, within PGA1_c02870at 277.097 kb on - strand, within PGA1_c02870at 277.121 kb on + strand, within PGA1_c02870at 277.121 kb on - strand, within PGA1_c02870at 277.129 kb on - strand, within PGA1_c02870at 277.161 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.214 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.271 kb on + strand, within PGA1_c02870at 277.289 kb on + strand, within PGA1_c02870at 277.289 kb on + strand, within PGA1_c02870at 277.289 kb on + strand, within PGA1_c02870at 277.289 kb on + strand, within PGA1_c02870at 277.297 kb on - strand, within PGA1_c02870at 277.305 kb on + strand, within PGA1_c02870at 277.305 kb on + strand, within PGA1_c02870at 277.305 kb on + strand, within PGA1_c02870at 277.305 kb on + strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.344 kb on + strand, within PGA1_c02870at 277.381 kb on + strandat 277.389 kb on - strandat 277.396 kb on + strandat 277.404 kb on - strandat 277.426 kb on + strandat 277.439 kb on + strandat 277.439 kb on + strandat 277.447 kb on - strandat 277.447 kb on - strandat 277.447 kb on - strandat 277.473 kb on + strandat 277.473 kb on + strandat 277.482 kb on - strandat 277.571 kb on - strandat 277.630 kb on + strandat 277.637 kb on + strandat 277.645 kb on - strandat 277.645 kb on - strandat 277.647 kb on + strandat 277.647 kb on + strandat 277.655 kb on - strandat 277.655 kb on - strandat 277.671 kb on - strandat 277.746 kb on - strandat 277.751 kb on + strandat 277.751 kb on + strandat 277.759 kb on - strandat 277.759 kb on - strandat 277.759 kb on - strandat 277.794 kb on + strandat 277.797 kb on - strandat 277.801 kb on + strandat 277.816 kb on + strandat 277.824 kb on + strandat 277.824 kb on + strandat 277.832 kb on - strandat 277.832 kb on - strandat 277.832 kb on - strandat 277.832 kb on - strandat 277.852 kb on - strandat 277.880 kb on - strandat 277.924 kb on + strandat 277.924 kb on + strandat 277.932 kb on - strand, within PGA1_c02880at 277.932 kb on - strand, within PGA1_c02880at 277.985 kb on + strand, within PGA1_c02880at 278.053 kb on - strand, within PGA1_c02880at 278.053 kb on - strand, within PGA1_c02880at 278.057 kb on + strand, within PGA1_c02880at 278.070 kb on - strand, within PGA1_c02880at 278.201 kb on - strand, within PGA1_c02880at 278.238 kb on - strand, within PGA1_c02880at 278.328 kb on - strand, within PGA1_c02880

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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276,595 - -0.1
276,595 - +1.4
276,600 - +0.3
276,605 + +1.1
276,629 + +0.0
276,629 + -0.6
276,629 + +0.6
276,629 + +0.1
276,629 + -0.2
276,637 - -0.7
276,637 - -0.2
276,637 - +1.5
276,637 - +0.5
276,637 - +0.4
276,754 - PGA1_c02870 0.14 -1.5
276,799 + PGA1_c02870 0.20 +1.2
276,807 - PGA1_c02870 0.21 +0.4
276,830 - PGA1_c02870 0.24 -0.8
276,869 + PGA1_c02870 0.29 -1.6
276,887 + PGA1_c02870 0.31 -0.6
276,969 - PGA1_c02870 0.42 -0.2
277,025 - PGA1_c02870 0.49 -0.6
277,097 - PGA1_c02870 0.58 +0.8
277,121 + PGA1_c02870 0.61 +1.0
277,121 - PGA1_c02870 0.61 -2.5
277,129 - PGA1_c02870 0.62 -0.4
277,161 + PGA1_c02870 0.66 -1.5
277,166 + PGA1_c02870 0.67 -0.4
277,166 + PGA1_c02870 0.67 -2.6
277,166 + PGA1_c02870 0.67 -1.0
277,166 + PGA1_c02870 0.67 +0.7
277,166 + PGA1_c02870 0.67 -0.4
277,166 + PGA1_c02870 0.67 -0.6
277,166 + PGA1_c02870 0.67 -0.8
277,174 - PGA1_c02870 0.68 +1.1
277,174 - PGA1_c02870 0.68 +0.9
277,174 - PGA1_c02870 0.68 -1.7
277,174 - PGA1_c02870 0.68 +0.3
277,174 - PGA1_c02870 0.68 -3.5
277,214 + PGA1_c02870 0.73 +0.0
277,229 + PGA1_c02870 0.75 -0.2
277,229 + PGA1_c02870 0.75 -0.3
277,229 + PGA1_c02870 0.75 -1.1
277,229 + PGA1_c02870 0.75 -0.5
277,229 + PGA1_c02870 0.75 +1.5
277,229 + PGA1_c02870 0.75 -0.4
277,271 + PGA1_c02870 0.80 +2.2
277,289 + PGA1_c02870 0.83 +0.0
277,289 + PGA1_c02870 0.83 -0.3
277,289 + PGA1_c02870 0.83 -0.9
277,289 + PGA1_c02870 0.83 -0.7
277,297 - PGA1_c02870 0.84 -1.1
277,305 + PGA1_c02870 0.85 -0.1
277,305 + PGA1_c02870 0.85 -0.2
277,305 + PGA1_c02870 0.85 +1.9
277,305 + PGA1_c02870 0.85 -0.2
277,313 - PGA1_c02870 0.86 +0.4
277,313 - PGA1_c02870 0.86 +0.4
277,313 - PGA1_c02870 0.86 +0.7
277,313 - PGA1_c02870 0.86 -0.5
277,313 - PGA1_c02870 0.86 +0.0
277,344 + PGA1_c02870 0.90 -1.0
277,381 + +0.3
277,389 - -0.2
277,396 + +0.5
277,404 - +0.1
277,426 + -0.1
277,439 + +0.1
277,439 + +1.1
277,447 - +0.3
277,447 - -0.0
277,447 - -0.6
277,473 + -0.9
277,473 + +0.9
277,482 - -1.2
277,571 - -1.2
277,630 + -2.3
277,637 + +1.0
277,645 - -0.5
277,645 - -3.3
277,647 + -0.4
277,647 + -0.1
277,655 - -1.2
277,655 - +1.6
277,671 - -0.3
277,746 - -0.2
277,751 + +0.0
277,751 + -0.8
277,759 - -1.0
277,759 - -0.4
277,759 - -1.3
277,794 + -0.1
277,797 - -3.0
277,801 + -0.8
277,816 + -2.0
277,824 + +0.7
277,824 + -1.1
277,832 - -1.5
277,832 - +0.1
277,832 - +1.4
277,832 - +0.5
277,852 - +1.2
277,880 - -1.0
277,924 + -0.1
277,924 + +1.0
277,932 - PGA1_c02880 0.10 +0.1
277,932 - PGA1_c02880 0.10 +0.9
277,985 + PGA1_c02880 0.13 -1.3
278,053 - PGA1_c02880 0.17 +0.4
278,053 - PGA1_c02880 0.17 +0.2
278,057 + PGA1_c02880 0.17 +0.4
278,070 - PGA1_c02880 0.18 -3.0
278,201 - PGA1_c02880 0.25 -2.0
278,238 - PGA1_c02880 0.27 -1.2
278,328 - PGA1_c02880 0.31 -2.6

Or see this region's nucleotide sequence