Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1842

Experiment: perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1841 and Psest_1842 are separated by 110 nucleotidesPsest_1842 and Psest_1843 are separated by 80 nucleotidesPsest_1843 and Psest_1844 are separated by 52 nucleotides Psest_1841: Psest_1841 - lipid kinase YegS, at 1,945,158 to 1,946,069 _1841 Psest_1842: Psest_1842 - Chemotaxis signal transduction protein, at 1,946,180 to 1,947,112 _1842 Psest_1843: Psest_1843 - Uncharacterized Fe-S protein, at 1,947,193 to 1,947,993 _1843 Psest_1844: Psest_1844 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,948,046 to 1,949,968 _1844 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -2 -1 0 1at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.496 kb on - strand, within Psest_1841at 1945.496 kb on - strand, within Psest_1841at 1945.553 kb on + strand, within Psest_1841at 1945.632 kb on + strand, within Psest_1841at 1945.633 kb on - strand, within Psest_1841at 1945.633 kb on - strand, within Psest_1841at 1945.746 kb on - strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.814 kb on + strand, within Psest_1841at 1945.814 kb on + strand, within Psest_1841at 1945.814 kb on + strand, within Psest_1841at 1945.814 kb on + strand, within Psest_1841at 1945.815 kb on - strand, within Psest_1841at 1945.815 kb on - strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.862 kb on - strand, within Psest_1841at 1945.862 kb on - strand, within Psest_1841at 1945.862 kb on - strand, within Psest_1841at 1946.120 kb on + strandat 1946.120 kb on + strandat 1946.150 kb on + strandat 1946.150 kb on + strandat 1946.151 kb on - strandat 1946.347 kb on + strand, within Psest_1842at 1946.347 kb on + strand, within Psest_1842at 1946.348 kb on - strand, within Psest_1842at 1946.468 kb on + strand, within Psest_1842at 1946.468 kb on + strand, within Psest_1842at 1946.469 kb on - strand, within Psest_1842at 1946.574 kb on - strand, within Psest_1842at 1946.655 kb on - strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.974 kb on - strand, within Psest_1842at 1947.139 kb on + strandat 1947.139 kb on + strandat 1947.140 kb on - strandat 1947.158 kb on + strandat 1947.158 kb on + strandat 1947.159 kb on - strandat 1947.159 kb on - strandat 1947.595 kb on + strand, within Psest_1843at 1947.703 kb on - strand, within Psest_1843at 1947.759 kb on + strand, within Psest_1843at 1948.047 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 25 mM
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1,945,495 + Psest_1841 0.37 -0.5
1,945,495 + Psest_1841 0.37 -0.8
1,945,495 + Psest_1841 0.37 -0.5
1,945,495 + Psest_1841 0.37 +0.2
1,945,495 + Psest_1841 0.37 +0.6
1,945,495 + Psest_1841 0.37 +0.1
1,945,496 - Psest_1841 0.37 -0.2
1,945,496 - Psest_1841 0.37 +0.0
1,945,553 + Psest_1841 0.43 +0.1
1,945,632 + Psest_1841 0.52 -0.4
1,945,633 - Psest_1841 0.52 +0.1
1,945,633 - Psest_1841 0.52 +0.7
1,945,746 - Psest_1841 0.64 -0.5
1,945,810 + Psest_1841 0.71 -0.7
1,945,810 + Psest_1841 0.71 -0.8
1,945,810 + Psest_1841 0.71 -0.4
1,945,810 + Psest_1841 0.71 -0.2
1,945,810 + Psest_1841 0.71 -0.8
1,945,810 + Psest_1841 0.71 -0.2
1,945,810 + Psest_1841 0.71 -0.3
1,945,810 + Psest_1841 0.71 -0.0
1,945,810 + Psest_1841 0.71 -2.3
1,945,810 + Psest_1841 0.71 +0.2
1,945,810 + Psest_1841 0.71 -0.7
1,945,810 + Psest_1841 0.71 -0.1
1,945,810 + Psest_1841 0.71 -1.2
1,945,810 + Psest_1841 0.71 -0.7
1,945,810 + Psest_1841 0.71 -1.6
1,945,810 + Psest_1841 0.71 -0.4
1,945,810 + Psest_1841 0.71 +0.8
1,945,810 + Psest_1841 0.71 +0.8
1,945,810 + Psest_1841 0.71 +0.0
1,945,810 + Psest_1841 0.71 -0.3
1,945,811 - Psest_1841 0.72 -0.3
1,945,811 - Psest_1841 0.72 -0.2
1,945,811 - Psest_1841 0.72 -0.2
1,945,811 - Psest_1841 0.72 -0.3
1,945,811 - Psest_1841 0.72 -1.1
1,945,811 - Psest_1841 0.72 -0.9
1,945,811 - Psest_1841 0.72 +0.4
1,945,811 - Psest_1841 0.72 -0.5
1,945,811 - Psest_1841 0.72 +0.2
1,945,814 + Psest_1841 0.72 -0.4
1,945,814 + Psest_1841 0.72 +0.2
1,945,814 + Psest_1841 0.72 -0.7
1,945,814 + Psest_1841 0.72 -0.3
1,945,815 - Psest_1841 0.72 +0.6
1,945,815 - Psest_1841 0.72 +0.1
1,945,861 + Psest_1841 0.77 -0.6
1,945,861 + Psest_1841 0.77 -1.4
1,945,861 + Psest_1841 0.77 -0.6
1,945,861 + Psest_1841 0.77 -0.0
1,945,861 + Psest_1841 0.77 +0.5
1,945,862 - Psest_1841 0.77 -0.2
1,945,862 - Psest_1841 0.77 +0.4
1,945,862 - Psest_1841 0.77 -1.2
1,946,120 + -0.2
1,946,120 + +0.2
1,946,150 + +0.4
1,946,150 + +0.9
1,946,151 - +0.0
1,946,347 + Psest_1842 0.18 -0.5
1,946,347 + Psest_1842 0.18 -1.1
1,946,348 - Psest_1842 0.18 -0.8
1,946,468 + Psest_1842 0.31 +0.4
1,946,468 + Psest_1842 0.31 -0.3
1,946,469 - Psest_1842 0.31 -0.5
1,946,574 - Psest_1842 0.42 -1.2
1,946,655 - Psest_1842 0.51 -0.9
1,946,966 + Psest_1842 0.84 -0.7
1,946,966 + Psest_1842 0.84 -0.8
1,946,966 + Psest_1842 0.84 -0.9
1,946,966 + Psest_1842 0.84 -1.0
1,946,966 + Psest_1842 0.84 -0.3
1,946,966 + Psest_1842 0.84 -0.1
1,946,966 + Psest_1842 0.84 -0.7
1,946,966 + Psest_1842 0.84 -0.4
1,946,967 - Psest_1842 0.84 -1.0
1,946,967 - Psest_1842 0.84 -1.6
1,946,967 - Psest_1842 0.84 +0.7
1,946,967 - Psest_1842 0.84 -0.0
1,946,967 - Psest_1842 0.84 +0.1
1,946,967 - Psest_1842 0.84 -0.3
1,946,967 - Psest_1842 0.84 -1.5
1,946,974 - Psest_1842 0.85 -1.0
1,947,139 + -1.2
1,947,139 + -0.3
1,947,140 - +0.1
1,947,158 + -0.2
1,947,158 + -0.9
1,947,159 - +0.1
1,947,159 - +1.4
1,947,595 + Psest_1843 0.50 -0.1
1,947,703 - Psest_1843 0.64 +0.6
1,947,759 + Psest_1843 0.71 +0.5
1,948,047 + -0.1

Or see this region's nucleotide sequence