Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15870 and PGA1_c15880 are separated by 28 nucleotides PGA1_c15880 and PGA1_c15890 are separated by 481 nucleotides
PGA1_c15870: PGA1_c15870 - transcriptional regulator, AraC family, at 1,646,933 to 1,647,937
_c15870
PGA1_c15880: PGA1_c15880 - soluble aldose sugar dehydrogenase YliI, at 1,647,966 to 1,649,069
_c15880
PGA1_c15890: PGA1_c15890 - extracellular ligand-binding receptor, at 1,649,551 to 1,650,744
_c15890
Position (kb)
1647
1648
1649
1650 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1647.075 kb on + strand, within PGA1_c15870 at 1647.075 kb on + strand, within PGA1_c15870 at 1647.083 kb on + strand, within PGA1_c15870 at 1647.083 kb on + strand, within PGA1_c15870 at 1647.083 kb on + strand, within PGA1_c15870 at 1647.088 kb on + strand, within PGA1_c15870 at 1647.088 kb on + strand, within PGA1_c15870 at 1647.090 kb on + strand, within PGA1_c15870 at 1647.091 kb on - strand, within PGA1_c15870 at 1647.096 kb on - strand, within PGA1_c15870 at 1647.096 kb on - strand, within PGA1_c15870 at 1647.098 kb on - strand, within PGA1_c15870 at 1647.098 kb on - strand, within PGA1_c15870 at 1647.099 kb on + strand, within PGA1_c15870 at 1647.104 kb on + strand, within PGA1_c15870 at 1647.117 kb on - strand, within PGA1_c15870 at 1647.122 kb on - strand, within PGA1_c15870 at 1647.145 kb on - strand, within PGA1_c15870 at 1647.272 kb on + strand, within PGA1_c15870 at 1647.280 kb on - strand, within PGA1_c15870 at 1647.289 kb on + strand, within PGA1_c15870 at 1647.323 kb on + strand, within PGA1_c15870 at 1647.393 kb on + strand, within PGA1_c15870 at 1647.393 kb on + strand, within PGA1_c15870 at 1647.393 kb on + strand, within PGA1_c15870 at 1647.470 kb on - strand, within PGA1_c15870 at 1647.482 kb on - strand, within PGA1_c15870 at 1647.565 kb on - strand, within PGA1_c15870 at 1647.704 kb on - strand, within PGA1_c15870 at 1647.741 kb on + strand, within PGA1_c15870 at 1647.751 kb on + strand, within PGA1_c15870 at 1647.827 kb on - strand, within PGA1_c15870 at 1647.888 kb on - strand at 1647.888 kb on - strand at 1647.891 kb on + strand at 1647.900 kb on - strand at 1648.038 kb on - strand at 1648.066 kb on + strand at 1648.074 kb on - strand at 1648.074 kb on - strand at 1648.143 kb on + strand, within PGA1_c15880 at 1648.143 kb on + strand, within PGA1_c15880 at 1648.162 kb on + strand, within PGA1_c15880 at 1648.167 kb on + strand, within PGA1_c15880 at 1648.175 kb on - strand, within PGA1_c15880 at 1648.177 kb on + strand, within PGA1_c15880 at 1648.177 kb on + strand, within PGA1_c15880 at 1648.180 kb on - strand, within PGA1_c15880 at 1648.185 kb on - strand, within PGA1_c15880 at 1648.198 kb on - strand, within PGA1_c15880 at 1648.232 kb on + strand, within PGA1_c15880 at 1648.276 kb on + strand, within PGA1_c15880 at 1648.276 kb on + strand, within PGA1_c15880 at 1648.276 kb on + strand, within PGA1_c15880 at 1648.308 kb on + strand, within PGA1_c15880 at 1648.343 kb on + strand, within PGA1_c15880 at 1648.381 kb on - strand, within PGA1_c15880 at 1648.399 kb on + strand, within PGA1_c15880 at 1648.407 kb on - strand, within PGA1_c15880 at 1648.419 kb on - strand, within PGA1_c15880 at 1648.461 kb on + strand, within PGA1_c15880 at 1648.474 kb on - strand, within PGA1_c15880 at 1648.481 kb on + strand, within PGA1_c15880 at 1648.489 kb on - strand, within PGA1_c15880 at 1648.502 kb on + strand, within PGA1_c15880 at 1648.505 kb on + strand, within PGA1_c15880 at 1648.515 kb on + strand, within PGA1_c15880 at 1648.518 kb on - strand, within PGA1_c15880 at 1648.518 kb on - strand, within PGA1_c15880 at 1648.536 kb on - strand, within PGA1_c15880 at 1648.536 kb on - strand, within PGA1_c15880 at 1648.570 kb on - strand, within PGA1_c15880 at 1648.686 kb on - strand, within PGA1_c15880 at 1648.746 kb on + strand, within PGA1_c15880 at 1648.750 kb on + strand, within PGA1_c15880 at 1648.785 kb on - strand, within PGA1_c15880 at 1648.790 kb on - strand, within PGA1_c15880 at 1648.837 kb on + strand, within PGA1_c15880 at 1648.837 kb on + strand, within PGA1_c15880 at 1648.837 kb on + strand, within PGA1_c15880 at 1648.845 kb on - strand, within PGA1_c15880 at 1648.896 kb on + strand, within PGA1_c15880 at 1648.901 kb on + strand, within PGA1_c15880 at 1648.984 kb on + strand at 1648.984 kb on + strand at 1648.989 kb on + strand at 1649.033 kb on + strand at 1649.052 kb on - strand at 1649.076 kb on + strand at 1649.111 kb on + strand at 1649.124 kb on + strand at 1649.172 kb on + strand at 1649.218 kb on - strand at 1649.227 kb on - strand at 1649.252 kb on - strand at 1649.254 kb on + strand at 1649.254 kb on + strand at 1649.262 kb on - strand at 1649.265 kb on + strand at 1649.265 kb on + strand at 1649.273 kb on - strand at 1649.378 kb on + strand at 1649.386 kb on + strand at 1649.386 kb on - strand at 1649.410 kb on - strand at 1649.410 kb on - strand at 1649.410 kb on - strand at 1649.410 kb on - strand at 1649.416 kb on + strand at 1649.424 kb on + strand at 1649.425 kb on + strand at 1649.425 kb on + strand at 1649.576 kb on - strand at 1649.584 kb on + strand at 1649.627 kb on - strand at 1649.641 kb on - strand at 1649.737 kb on + strand, within PGA1_c15890 at 1649.754 kb on + strand, within PGA1_c15890 at 1649.794 kb on + strand, within PGA1_c15890 at 1649.847 kb on + strand, within PGA1_c15890 at 1649.855 kb on - strand, within PGA1_c15890 at 1649.861 kb on + strand, within PGA1_c15890 at 1649.949 kb on + strand, within PGA1_c15890 at 1649.957 kb on - strand, within PGA1_c15890 at 1649.959 kb on - strand, within PGA1_c15890 at 1649.989 kb on - strand, within PGA1_c15890 at 1650.007 kb on + strand, within PGA1_c15890 at 1650.007 kb on + strand, within PGA1_c15890 at 1650.012 kb on + strand, within PGA1_c15890 at 1650.058 kb on - strand, within PGA1_c15890 at 1650.060 kb on + strand, within PGA1_c15890 at 1650.060 kb on + strand, within PGA1_c15890 at 1650.060 kb on + strand, within PGA1_c15890 at 1650.068 kb on - strand, within PGA1_c15890
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,647,075 + PGA1_c15870 0.14 -0.0 1,647,075 + PGA1_c15870 0.14 -3.0 1,647,083 + PGA1_c15870 0.15 -1.4 1,647,083 + PGA1_c15870 0.15 +1.7 1,647,083 + PGA1_c15870 0.15 -1.4 1,647,088 + PGA1_c15870 0.15 -1.1 1,647,088 + PGA1_c15870 0.15 -0.1 1,647,090 + PGA1_c15870 0.16 +0.1 1,647,091 - PGA1_c15870 0.16 -0.1 1,647,096 - PGA1_c15870 0.16 -0.5 1,647,096 - PGA1_c15870 0.16 -2.4 1,647,098 - PGA1_c15870 0.16 -2.3 1,647,098 - PGA1_c15870 0.16 +0.0 1,647,099 + PGA1_c15870 0.17 -2.3 1,647,104 + PGA1_c15870 0.17 +0.6 1,647,117 - PGA1_c15870 0.18 -2.9 1,647,122 - PGA1_c15870 0.19 +0.4 1,647,145 - PGA1_c15870 0.21 -0.7 1,647,272 + PGA1_c15870 0.34 -1.4 1,647,280 - PGA1_c15870 0.35 +0.1 1,647,289 + PGA1_c15870 0.35 -1.0 1,647,323 + PGA1_c15870 0.39 +0.6 1,647,393 + PGA1_c15870 0.46 +1.0 1,647,393 + PGA1_c15870 0.46 +0.3 1,647,393 + PGA1_c15870 0.46 +1.1 1,647,470 - PGA1_c15870 0.53 -0.9 1,647,482 - PGA1_c15870 0.55 -1.3 1,647,565 - PGA1_c15870 0.63 -0.6 1,647,704 - PGA1_c15870 0.77 +0.1 1,647,741 + PGA1_c15870 0.80 -0.7 1,647,751 + PGA1_c15870 0.81 -1.0 1,647,827 - PGA1_c15870 0.89 -2.9 1,647,888 - -2.3 1,647,888 - +0.7 1,647,891 + -0.9 1,647,900 - +0.8 1,648,038 - +1.2 1,648,066 + +0.7 1,648,074 - -1.4 1,648,074 - +0.7 1,648,143 + PGA1_c15880 0.16 -0.7 1,648,143 + PGA1_c15880 0.16 -0.6 1,648,162 + PGA1_c15880 0.18 -0.8 1,648,167 + PGA1_c15880 0.18 +0.3 1,648,175 - PGA1_c15880 0.19 -0.0 1,648,177 + PGA1_c15880 0.19 +0.1 1,648,177 + PGA1_c15880 0.19 +0.6 1,648,180 - PGA1_c15880 0.19 +0.9 1,648,185 - PGA1_c15880 0.20 -0.2 1,648,198 - PGA1_c15880 0.21 -0.3 1,648,232 + PGA1_c15880 0.24 +0.5 1,648,276 + PGA1_c15880 0.28 -0.1 1,648,276 + PGA1_c15880 0.28 +0.4 1,648,276 + PGA1_c15880 0.28 +0.9 1,648,308 + PGA1_c15880 0.31 +0.0 1,648,343 + PGA1_c15880 0.34 -0.0 1,648,381 - PGA1_c15880 0.38 -1.2 1,648,399 + PGA1_c15880 0.39 +0.9 1,648,407 - PGA1_c15880 0.40 -0.4 1,648,419 - PGA1_c15880 0.41 -0.1 1,648,461 + PGA1_c15880 0.45 +0.6 1,648,474 - PGA1_c15880 0.46 +1.4 1,648,481 + PGA1_c15880 0.47 -2.2 1,648,489 - PGA1_c15880 0.47 +0.1 1,648,502 + PGA1_c15880 0.49 -0.0 1,648,505 + PGA1_c15880 0.49 -0.5 1,648,515 + PGA1_c15880 0.50 +1.3 1,648,518 - PGA1_c15880 0.50 +0.7 1,648,518 - PGA1_c15880 0.50 -1.5 1,648,536 - PGA1_c15880 0.52 -0.3 1,648,536 - PGA1_c15880 0.52 +0.4 1,648,570 - PGA1_c15880 0.55 -0.9 1,648,686 - PGA1_c15880 0.65 +0.3 1,648,746 + PGA1_c15880 0.71 -2.0 1,648,750 + PGA1_c15880 0.71 -1.0 1,648,785 - PGA1_c15880 0.74 -1.2 1,648,790 - PGA1_c15880 0.75 -0.8 1,648,837 + PGA1_c15880 0.79 -1.9 1,648,837 + PGA1_c15880 0.79 +0.6 1,648,837 + PGA1_c15880 0.79 -0.7 1,648,845 - PGA1_c15880 0.80 -0.5 1,648,896 + PGA1_c15880 0.84 +0.6 1,648,901 + PGA1_c15880 0.85 -0.5 1,648,984 + +0.4 1,648,984 + +1.3 1,648,989 + -0.1 1,649,033 + -0.5 1,649,052 - -1.2 1,649,076 + +0.2 1,649,111 + +0.6 1,649,124 + -0.8 1,649,172 + +0.2 1,649,218 - -0.4 1,649,227 - -0.0 1,649,252 - +0.4 1,649,254 + +1.1 1,649,254 + -0.1 1,649,262 - -1.0 1,649,265 + -1.0 1,649,265 + -0.9 1,649,273 - -0.1 1,649,378 + -0.1 1,649,386 + -2.3 1,649,386 - -2.1 1,649,410 - +1.0 1,649,410 - +0.4 1,649,410 - -0.8 1,649,410 - -1.0 1,649,416 + +0.2 1,649,424 + -0.2 1,649,425 + -0.8 1,649,425 + +0.1 1,649,576 - -0.4 1,649,584 + +1.0 1,649,627 - +1.1 1,649,641 - +0.4 1,649,737 + PGA1_c15890 0.16 +0.7 1,649,754 + PGA1_c15890 0.17 -0.5 1,649,794 + PGA1_c15890 0.20 -0.3 1,649,847 + PGA1_c15890 0.25 -1.9 1,649,855 - PGA1_c15890 0.25 +1.1 1,649,861 + PGA1_c15890 0.26 -0.1 1,649,949 + PGA1_c15890 0.33 -0.8 1,649,957 - PGA1_c15890 0.34 +0.4 1,649,959 - PGA1_c15890 0.34 -1.3 1,649,989 - PGA1_c15890 0.37 -0.2 1,650,007 + PGA1_c15890 0.38 -0.3 1,650,007 + PGA1_c15890 0.38 -0.4 1,650,012 + PGA1_c15890 0.39 +1.4 1,650,058 - PGA1_c15890 0.42 +1.4 1,650,060 + PGA1_c15890 0.43 -0.5 1,650,060 + PGA1_c15890 0.43 -1.1 1,650,060 + PGA1_c15890 0.43 -3.0 1,650,068 - PGA1_c15890 0.43 +0.1
Or see this region's nucleotide sequence