Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13690

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
1,411,993	-				+0.7
1,411,993	-				+0.7
1,412,061	-				-0.4
1,412,061	-				-0.5
1,412,069	-				-0.7
1,412,122	+		PGA1_c13680	0.14	-0.4
1,412,155	-		PGA1_c13680	0.17	-2.3
1,412,246	+		PGA1_c13680	0.27	-0.1
1,412,265	+		PGA1_c13680	0.29	+0.4
1,412,267	+		PGA1_c13680	0.29	+0.7
1,412,267	+		PGA1_c13680	0.29	-0.4
1,412,297	-		PGA1_c13680	0.32	-1.7
1,412,420	-		PGA1_c13680	0.45	+0.6
1,412,440	+		PGA1_c13680	0.47	+0.4
1,412,445	-		PGA1_c13680	0.48	-0.9
1,412,496	+		PGA1_c13680	0.53	+0.4
1,412,557	-		PGA1_c13680	0.60	+0.6
1,412,597	+		PGA1_c13680	0.64	+0.6
1,412,629	-		PGA1_c13680	0.67	-1.0
1,412,665	+		PGA1_c13680	0.71	+0.2
1,412,665	+		PGA1_c13680	0.71	+1.2
1,412,665	+		PGA1_c13680	0.71	+0.8
1,412,665	+		PGA1_c13680	0.71	+0.8
1,412,665	+		PGA1_c13680	0.71	+0.4
1,412,673	-		PGA1_c13680	0.72	+0.7
1,412,712	+		PGA1_c13680	0.76	-0.4
1,412,712	+		PGA1_c13680	0.76	+0.4
1,412,714	-		PGA1_c13680	0.76	-0.5
1,412,720	-		PGA1_c13680	0.77	-0.0
1,412,784	+		PGA1_c13680	0.83	+0.5
1,412,813	-		PGA1_c13680	0.87	+0.1
1,412,844	+		PGA1_c13680	0.90	+0.6
1,412,861	+				-2.8
1,412,866	+				+0.2
1,412,866	+				+0.1
1,412,874	-				+2.2
1,412,874	-				+0.8
1,412,876	+				-1.0
1,412,876	+				+0.3
1,412,876	+				+1.4
1,412,876	+				-0.7
1,412,876	+				+1.6
1,412,876	+				-0.9
1,412,876	+				-1.8
1,412,884	-				-0.0
1,412,884	-				+1.0
1,412,884	-				-0.3
1,412,884	-				+1.6
1,412,884	-				+0.7
1,412,884	-				+1.1
1,412,884	-				-0.8
1,412,884	-				+0.3
1,412,884	-				+0.5
1,412,884	-				+0.4
1,412,884	-				+0.5
1,412,884	-				-0.3
1,412,884	-				+1.2
1,412,884	-				-0.8
1,412,966	+				-1.3
1,412,980	-				-1.2
1,412,980	-				-0.1
1,413,022	+				-1.0
1,413,022	+				-2.3
1,413,022	+				+0.3
1,413,022	+				-1.7
1,413,030	-				+0.2
1,413,030	-				+0.8
1,413,030	-				-0.6
1,413,030	-				-0.1
1,413,084	-		PGA1_c13690	0.16	-0.2
1,413,084	-		PGA1_c13690	0.16	+0.5
1,413,084	-		PGA1_c13690	0.16	+1.6
1,413,084	-		PGA1_c13690	0.16	+0.9
1,413,086	+		PGA1_c13690	0.16	+0.2
1,413,086	+		PGA1_c13690	0.16	+1.0
1,413,099	-		PGA1_c13690	0.17	+1.8
1,413,156	+		PGA1_c13690	0.23	+1.1
1,413,178	+		PGA1_c13690	0.26	+0.5
1,413,186	-		PGA1_c13690	0.27	+0.5
1,413,186	-		PGA1_c13690	0.27	+0.4
1,413,195	+		PGA1_c13690	0.28	+1.4
1,413,203	+		PGA1_c13690	0.28	+1.1
1,413,210	+		PGA1_c13690	0.29	-2.8
1,413,258	-		PGA1_c13690	0.34	+0.1
1,413,268	-		PGA1_c13690	0.35	+0.4
1,413,271	+		PGA1_c13690	0.36	+0.5
1,413,277	+		PGA1_c13690	0.36	+0.8
1,413,278	-		PGA1_c13690	0.36	+0.1
1,413,279	-		PGA1_c13690	0.37	+0.9
1,413,291	+		PGA1_c13690	0.38	+0.1
1,413,305	+		PGA1_c13690	0.39	+0.7
1,413,348	+		PGA1_c13690	0.44	-0.3
1,413,351	-		PGA1_c13690	0.44	+0.6
1,413,406	-		PGA1_c13690	0.50	+0.6
1,413,470	+		PGA1_c13690	0.57	+0.9
1,413,472	+		PGA1_c13690	0.57	+1.0
1,413,472	+		PGA1_c13690	0.57	+0.3
1,413,473	-		PGA1_c13690	0.57	-0.0
1,413,480	-		PGA1_c13690	0.58	-0.5
1,413,480	-		PGA1_c13690	0.58	+0.8
1,413,513	+		PGA1_c13690	0.62	-1.1
1,413,529	+		PGA1_c13690	0.64	+0.8
1,413,529	+		PGA1_c13690	0.64	-0.4
1,413,529	+		PGA1_c13690	0.64	-0.1
1,413,529	+		PGA1_c13690	0.64	-0.5
1,413,537	-		PGA1_c13690	0.64	+1.0
1,413,538	+		PGA1_c13690	0.65	+0.7
1,413,539	-		PGA1_c13690	0.65	-0.0
1,413,554	+		PGA1_c13690	0.66	-1.0
1,413,573	+		PGA1_c13690	0.68	-0.1
1,413,573	+		PGA1_c13690	0.68	+0.9
1,413,573	+		PGA1_c13690	0.68	+0.1
1,413,603	-		PGA1_c13690	0.72	+0.4
1,413,609	-		PGA1_c13690	0.72	-1.8
1,413,616	+		PGA1_c13690	0.73	-0.0
1,413,659	+		PGA1_c13690	0.78	+0.8
1,413,699	-		PGA1_c13690	0.82	-1.0
1,413,705	-		PGA1_c13690	0.83	+0.2
1,413,739	-		PGA1_c13690	0.86	+0.6
1,413,765	-		PGA1_c13690	0.89	-0.3
1,413,770	+		PGA1_c13690	0.90	+1.2
1,413,851	+				+0.3
1,413,865	-				+2.4
1,413,890	-				-1.7
1,413,907	-				-0.3
1,413,948	-		PGA1_c13700	0.17	+0.5
1,413,948	-		PGA1_c13700	0.17	+2.3
1,413,959	-		PGA1_c13700	0.21	-0.3
1,413,962	+		PGA1_c13700	0.22	-0.4
1,414,026	-		PGA1_c13700	0.45	+0.0
1,414,026	-		PGA1_c13700	0.45	+0.6
1,414,053	-		PGA1_c13700	0.54	+1.9
1,414,101	+		PGA1_c13700	0.71	-0.9
1,414,101	+		PGA1_c13700	0.71	+0.7
1,414,109	-		PGA1_c13700	0.74	-0.3
1,414,126	+		PGA1_c13700	0.80	-2.2
1,414,126	+		PGA1_c13700	0.80	-0.3
1,414,133	+		PGA1_c13700	0.83	+0.5
1,414,160	-				+0.3
1,414,174	+				+2.1
1,414,174	+				+2.0
1,414,259	-				+0.6
1,414,275	+				+1.0
1,414,283	-				-0.6
1,414,303	+				-0.4
1,414,342	+				+1.3
1,414,348	+				+0.7
1,414,350	-				+0.3
1,414,350	-				+0.3
1,414,355	-				-1.1
1,414,410	+				-0.7
1,414,449	-		PGA1_c13710	0.11	+0.4
1,414,486	+		PGA1_c13710	0.12	+0.2
1,414,491	+		PGA1_c13710	0.12	+0.5
1,414,491	+		PGA1_c13710	0.12	-0.9
1,414,491	+		PGA1_c13710	0.12	-0.4
1,414,499	-		PGA1_c13710	0.13	-0.4
1,414,560	+		PGA1_c13710	0.15	+0.2
1,414,649	-		PGA1_c13710	0.19	-0.1
1,414,660	+		PGA1_c13710	0.19	-0.1
1,414,684	+		PGA1_c13710	0.20	+0.1
1,414,712	+		PGA1_c13710	0.21	+0.5
1,414,716	-		PGA1_c13710	0.21	-2.2
1,414,753	+		PGA1_c13710	0.23	-0.1
1,414,765	+		PGA1_c13710	0.23	-0.6
1,414,765	+		PGA1_c13710	0.23	-0.9
1,414,765	+		PGA1_c13710	0.23	+0.8
1,414,765	+		PGA1_c13710	0.23	+0.4
1,414,765	+		PGA1_c13710	0.23	+1.0
1,414,773	-		PGA1_c13710	0.24	-1.2
1,414,773	-		PGA1_c13710	0.24	-0.8
1,414,797	+		PGA1_c13710	0.25	+0.1
1,414,840	+		PGA1_c13710	0.26	-0.1
1,414,848	-		PGA1_c13710	0.27	+0.4