Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1267

Experiment: perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1266 and Psest_1267 are separated by 4 nucleotidesPsest_1267 and Psest_1268 are separated by 158 nucleotides Psest_1266: Psest_1266 - ribosome-associated GTPase EngA, at 1,371,182 to 1,372,675 _1266 Psest_1267: Psest_1267 - serine O-acetyltransferase, at 1,372,680 to 1,373,474 _1267 Psest_1268: Psest_1268 - Aspartate/tyrosine/aromatic aminotransferase, at 1,373,633 to 1,374,781 _1268 Position (kb) 1372 1373 1374Strain fitness (log2 ratio) -1 0 1at 1372.965 kb on + strand, within Psest_1267at 1372.965 kb on + strand, within Psest_1267at 1372.965 kb on + strand, within Psest_1267at 1372.965 kb on + strand, within Psest_1267at 1372.965 kb on + strand, within Psest_1267at 1372.965 kb on + strand, within Psest_1267at 1372.966 kb on - strand, within Psest_1267at 1372.966 kb on - strand, within Psest_1267at 1373.166 kb on + strand, within Psest_1267at 1373.166 kb on + strand, within Psest_1267at 1373.166 kb on + strand, within Psest_1267at 1373.167 kb on - strand, within Psest_1267at 1373.265 kb on + strand, within Psest_1267at 1373.265 kb on + strand, within Psest_1267at 1373.265 kb on + strand, within Psest_1267at 1373.265 kb on + strand, within Psest_1267at 1373.265 kb on + strand, within Psest_1267at 1373.266 kb on - strand, within Psest_1267at 1373.266 kb on - strand, within Psest_1267at 1373.266 kb on - strand, within Psest_1267at 1373.486 kb on + strandat 1373.486 kb on + strandat 1373.487 kb on - strandat 1373.487 kb on - strandat 1373.487 kb on - strandat 1373.523 kb on + strandat 1373.524 kb on - strandat 1373.644 kb on + strandat 1373.645 kb on - strandat 1373.677 kb on + strandat 1373.758 kb on - strand, within Psest_1268at 1373.973 kb on + strand, within Psest_1268at 1373.996 kb on + strand, within Psest_1268at 1374.015 kb on + strand, within Psest_1268at 1374.206 kb on + strand, within Psest_1268at 1374.206 kb on + strand, within Psest_1268at 1374.206 kb on + strand, within Psest_1268at 1374.206 kb on + strand, within Psest_1268at 1374.207 kb on - strand, within Psest_1268at 1374.207 kb on - strand, within Psest_1268at 1374.207 kb on - strand, within Psest_1268at 1374.207 kb on - strand, within Psest_1268at 1374.207 kb on - strand, within Psest_1268at 1374.207 kb on - strand, within Psest_1268at 1374.207 kb on - strand, within Psest_1268at 1374.228 kb on - strand, within Psest_1268at 1374.287 kb on + strand, within Psest_1268at 1374.287 kb on + strand, within Psest_1268at 1374.353 kb on + strand, within Psest_1268at 1374.404 kb on + strand, within Psest_1268

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 25 mM
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1,372,965 + Psest_1267 0.36 -0.7
1,372,965 + Psest_1267 0.36 -0.7
1,372,965 + Psest_1267 0.36 -0.0
1,372,965 + Psest_1267 0.36 -0.7
1,372,965 + Psest_1267 0.36 -0.8
1,372,965 + Psest_1267 0.36 -1.6
1,372,966 - Psest_1267 0.36 -1.1
1,372,966 - Psest_1267 0.36 -0.1
1,373,166 + Psest_1267 0.61 -0.2
1,373,166 + Psest_1267 0.61 -0.7
1,373,166 + Psest_1267 0.61 -0.8
1,373,167 - Psest_1267 0.61 -1.2
1,373,265 + Psest_1267 0.74 -0.8
1,373,265 + Psest_1267 0.74 -0.8
1,373,265 + Psest_1267 0.74 -0.7
1,373,265 + Psest_1267 0.74 -1.5
1,373,265 + Psest_1267 0.74 -0.2
1,373,266 - Psest_1267 0.74 -1.1
1,373,266 - Psest_1267 0.74 -0.4
1,373,266 - Psest_1267 0.74 -0.8
1,373,486 + -1.4
1,373,486 + +0.9
1,373,487 - +0.3
1,373,487 - +0.5
1,373,487 - +0.1
1,373,523 + -0.5
1,373,524 - +1.3
1,373,644 + -0.9
1,373,645 - +0.7
1,373,677 + -0.2
1,373,758 - Psest_1268 0.11 +0.4
1,373,973 + Psest_1268 0.30 +0.0
1,373,996 + Psest_1268 0.32 +0.2
1,374,015 + Psest_1268 0.33 -0.3
1,374,206 + Psest_1268 0.50 -0.0
1,374,206 + Psest_1268 0.50 -0.2
1,374,206 + Psest_1268 0.50 +0.7
1,374,206 + Psest_1268 0.50 -0.7
1,374,207 - Psest_1268 0.50 +0.7
1,374,207 - Psest_1268 0.50 +0.7
1,374,207 - Psest_1268 0.50 +0.4
1,374,207 - Psest_1268 0.50 +0.6
1,374,207 - Psest_1268 0.50 +0.2
1,374,207 - Psest_1268 0.50 +1.3
1,374,207 - Psest_1268 0.50 +0.5
1,374,228 - Psest_1268 0.52 +0.5
1,374,287 + Psest_1268 0.57 -0.7
1,374,287 + Psest_1268 0.57 -0.1
1,374,353 + Psest_1268 0.63 -0.1
1,374,404 + Psest_1268 0.67 +0.5

Or see this region's nucleotide sequence