Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4175 and Dshi_4176 are separated by 163 nucleotides Dshi_4176 and Dshi_4177 are separated by 91 nucleotides Dshi_4177 and Dshi_4178 are separated by 133 nucleotides Dshi_4178 and Dshi_4179 overlap by 8 nucleotides
Dshi_4175: Dshi_4175 - hypothetical protein (RefSeq), at 24,079 to 25,098
_4175
Dshi_4176: Dshi_4176 - oxidoreductase FAD/NAD(P)-binding domain protein (RefSeq), at 25,262 to 25,924
_4176
Dshi_4177: Dshi_4177 - Acetamidase/Formamidase (RefSeq), at 26,016 to 27,332
_4177
Dshi_4178: Dshi_4178 - hypothetical protein (RefSeq), at 27,466 to 28,224
_4178
Dshi_4179: Dshi_4179 - protein of unknown function DUF1469 (RefSeq), at 28,217 to 28,627
_4179
Position (kb) 26
27
28 Strain fitness (log2 ratio) -1
0
1 at 25.139 kb on - strand at 25.159 kb on + strand at 25.448 kb on - strand at 25.501 kb on + strand, within Dshi_4176 at 25.714 kb on - strand, within Dshi_4176 at 25.745 kb on - strand, within Dshi_4176 at 25.999 kb on + strand at 26.002 kb on - strand at 26.073 kb on - strand at 26.302 kb on + strand, within Dshi_4177 at 26.302 kb on + strand, within Dshi_4177 at 26.310 kb on - strand, within Dshi_4177 at 26.322 kb on + strand, within Dshi_4177 at 26.610 kb on + strand, within Dshi_4177 at 26.610 kb on + strand, within Dshi_4177 at 26.978 kb on + strand, within Dshi_4177 at 27.674 kb on + strand, within Dshi_4178 at 28.304 kb on - strand, within Dshi_4179
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 25,139 - -0.7 25,159 + -0.3 25,448 - +1.1 25,501 + Dshi_4176 0.36 -0.1 25,714 - Dshi_4176 0.68 +0.4 25,745 - Dshi_4176 0.73 +0.8 25,999 + -0.2 26,002 - +0.0 26,073 - +1.4 26,302 + Dshi_4177 0.22 +1.0 26,302 + Dshi_4177 0.22 +0.9 26,310 - Dshi_4177 0.22 +1.3 26,322 + Dshi_4177 0.23 -0.4 26,610 + Dshi_4177 0.45 +1.2 26,610 + Dshi_4177 0.45 -0.6 26,978 + Dshi_4177 0.73 -0.0 27,674 + Dshi_4178 0.27 +1.3 28,304 - Dshi_4179 0.21 -0.2
Or see this region's nucleotide sequence