Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2933

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2931 and Dshi_2932 are separated by 9 nucleotidesDshi_2932 and Dshi_2933 are separated by 106 nucleotidesDshi_2933 and Dshi_2934 are separated by 9 nucleotides Dshi_2931: Dshi_2931 - ribose-phosphate pyrophosphokinase (RefSeq), at 3,088,497 to 3,089,519 _2931 Dshi_2932: Dshi_2932 - hypothetical protein (RefSeq), at 3,089,529 to 3,089,879 _2932 Dshi_2933: Dshi_2933 - ATP synthase F1, epsilon subunit (RefSeq), at 3,089,986 to 3,090,381 _2933 Dshi_2934: Dshi_2934 - ATP synthase F1, beta subunit (RefSeq), at 3,090,391 to 3,091,815 _2934 Position (kb) 3089 3090 3091Strain fitness (log2 ratio) -1 0 1at 3089.535 kb on - strandat 3089.576 kb on + strand, within Dshi_2932at 3089.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,089,535 - -0.3
3,089,576 + Dshi_2932 0.13 -1.5
3,089,899 - +1.0

Or see this region's nucleotide sequence