Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1738

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1736 and Dshi_1737 are separated by 1 nucleotidesDshi_1737 and Dshi_1738 are separated by 304 nucleotidesDshi_1738 and Dshi_1739 are separated by 162 nucleotides Dshi_1736: Dshi_1736 - protein of unknown function DUF710 (RefSeq), at 1,802,535 to 1,802,939 _1736 Dshi_1737: Dshi_1737 - hypothetical protein (RefSeq), at 1,802,941 to 1,803,369 _1737 Dshi_1738: Dshi_1738 - transketolase (RefSeq), at 1,803,674 to 1,805,647 _1738 Dshi_1739: Dshi_1739 - protein of unknown function DUF808 (RefSeq), at 1,805,810 to 1,806,757 _1739 Position (kb) 1803 1804 1805 1806Strain fitness (log2 ratio) -3 -2 -1 0 1at 1802.912 kb on + strandat 1803.096 kb on + strand, within Dshi_1737at 1803.201 kb on - strand, within Dshi_1737at 1803.397 kb on - strandat 1805.931 kb on + strand, within Dshi_1739at 1806.009 kb on - strand, within Dshi_1739at 1806.345 kb on + strand, within Dshi_1739

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,802,912 + -1.2
1,803,096 + Dshi_1737 0.36 -1.4
1,803,201 - Dshi_1737 0.61 -2.9
1,803,397 - -1.4
1,805,931 + Dshi_1739 0.13 -0.4
1,806,009 - Dshi_1739 0.21 +0.9
1,806,345 + Dshi_1739 0.56 -0.2

Or see this region's nucleotide sequence