Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0840

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0839 and Dshi_0840 are separated by 29 nucleotidesDshi_0840 and Dshi_0841 are separated by 445 nucleotides Dshi_0839: Dshi_0839 - acyl-CoA dehydrogenase domain protein (RefSeq), at 849,631 to 851,409 _0839 Dshi_0840: Dshi_0840 - transcriptional regulator, MerR family (RefSeq), at 851,439 to 851,840 _0840 Dshi_0841: Dshi_0841 - hypothetical protein (RefSeq), at 852,286 to 853,314 _0841 Position (kb) 851 852Strain fitness (log2 ratio) -2 -1 0 1at 850.558 kb on + strand, within Dshi_0839at 850.766 kb on + strand, within Dshi_0839at 850.779 kb on - strand, within Dshi_0839at 850.790 kb on - strand, within Dshi_0839at 850.803 kb on + strand, within Dshi_0839at 850.869 kb on + strand, within Dshi_0839at 850.877 kb on - strand, within Dshi_0839at 850.882 kb on - strand, within Dshi_0839at 850.893 kb on - strand, within Dshi_0839at 850.914 kb on - strand, within Dshi_0839at 850.973 kb on + strand, within Dshi_0839at 851.076 kb on - strand, within Dshi_0839at 851.134 kb on - strand, within Dshi_0839at 851.184 kb on + strand, within Dshi_0839at 851.192 kb on - strand, within Dshi_0839at 851.250 kb on - strandat 851.250 kb on - strandat 851.302 kb on - strandat 851.396 kb on + strandat 851.495 kb on - strand, within Dshi_0840at 851.645 kb on + strand, within Dshi_0840at 851.691 kb on - strand, within Dshi_0840at 851.692 kb on - strand, within Dshi_0840at 851.712 kb on - strand, within Dshi_0840at 851.752 kb on + strand, within Dshi_0840at 851.760 kb on - strand, within Dshi_0840at 851.783 kb on + strand, within Dshi_0840at 851.783 kb on + strand, within Dshi_0840at 851.783 kb on + strand, within Dshi_0840at 851.793 kb on - strand, within Dshi_0840at 851.831 kb on - strandat 851.833 kb on - strandat 851.865 kb on - strandat 851.958 kb on + strandat 851.992 kb on + strandat 852.012 kb on + strandat 852.012 kb on + strandat 852.058 kb on - strandat 852.059 kb on + strandat 852.081 kb on - strandat 852.113 kb on - strandat 852.114 kb on - strandat 852.118 kb on + strandat 852.118 kb on + strandat 852.118 kb on + strandat 852.118 kb on + strandat 852.126 kb on - strandat 852.126 kb on - strandat 852.141 kb on + strandat 852.189 kb on - strandat 852.236 kb on + strandat 852.249 kb on - strandat 852.257 kb on - strandat 852.309 kb on + strandat 852.317 kb on + strandat 852.317 kb on - strandat 852.317 kb on - strandat 852.317 kb on - strandat 852.317 kb on - strandat 852.376 kb on - strandat 852.416 kb on + strand, within Dshi_0841at 852.478 kb on - strand, within Dshi_0841at 852.501 kb on + strand, within Dshi_0841at 852.509 kb on - strand, within Dshi_0841at 852.526 kb on + strand, within Dshi_0841at 852.637 kb on + strand, within Dshi_0841at 852.690 kb on - strand, within Dshi_0841at 852.694 kb on - strand, within Dshi_0841

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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850,558 + Dshi_0839 0.52 +0.7
850,766 + Dshi_0839 0.64 -0.2
850,779 - Dshi_0839 0.65 +0.7
850,790 - Dshi_0839 0.65 +1.2
850,803 + Dshi_0839 0.66 +0.6
850,869 + Dshi_0839 0.70 +0.9
850,877 - Dshi_0839 0.70 -1.0
850,882 - Dshi_0839 0.70 +0.5
850,893 - Dshi_0839 0.71 -0.1
850,914 - Dshi_0839 0.72 +0.3
850,973 + Dshi_0839 0.75 +1.5
851,076 - Dshi_0839 0.81 +0.3
851,134 - Dshi_0839 0.84 +0.3
851,184 + Dshi_0839 0.87 -0.1
851,192 - Dshi_0839 0.88 -0.3
851,250 - -0.0
851,250 - +0.2
851,302 - -0.7
851,396 + -0.1
851,495 - Dshi_0840 0.14 -0.8
851,645 + Dshi_0840 0.51 +0.6
851,691 - Dshi_0840 0.63 +0.6
851,692 - Dshi_0840 0.63 +0.3
851,712 - Dshi_0840 0.68 +1.3
851,752 + Dshi_0840 0.78 -0.0
851,760 - Dshi_0840 0.80 +0.4
851,783 + Dshi_0840 0.86 +0.3
851,783 + Dshi_0840 0.86 +0.9
851,783 + Dshi_0840 0.86 +0.8
851,793 - Dshi_0840 0.88 +0.4
851,831 - -0.2
851,833 - -0.1
851,865 - -0.9
851,958 + -0.1
851,992 + +1.0
852,012 + +0.9
852,012 + -2.2
852,058 - -0.4
852,059 + -2.5
852,081 - -0.1
852,113 - +0.3
852,114 - -1.7
852,118 + +0.2
852,118 + -0.2
852,118 + +0.8
852,118 + +0.4
852,126 - +1.1
852,126 - -0.4
852,141 + +0.8
852,189 - -0.3
852,236 + -1.0
852,249 - +0.8
852,257 - -0.1
852,309 + +0.1
852,317 + -0.3
852,317 - -1.0
852,317 - -0.2
852,317 - +0.1
852,317 - -0.8
852,376 - +0.2
852,416 + Dshi_0841 0.13 +0.4
852,478 - Dshi_0841 0.19 -0.8
852,501 + Dshi_0841 0.21 -0.6
852,509 - Dshi_0841 0.22 -0.9
852,526 + Dshi_0841 0.23 -0.6
852,637 + Dshi_0841 0.34 +0.1
852,690 - Dshi_0841 0.39 +0.0
852,694 - Dshi_0841 0.40 -0.1

Or see this region's nucleotide sequence