Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00630 and PGA1_c00640 are separated by 491 nucleotides PGA1_c00640 and PGA1_c00650 are separated by 109 nucleotides PGA1_c00650 and PGA1_c00660 are separated by 106 nucleotides
PGA1_c00630: PGA1_c00630 - signal recognition particle protein Ffh, at 61,993 to 63,516
_c00630
PGA1_c00640: PGA1_c00640 - putative elongation factor G, at 64,008 to 66,002
_c00640
PGA1_c00650: PGA1_c00650 - Uncharacterized conserved protein, at 66,112 to 66,639
_c00650
PGA1_c00660: PGA1_c00660 - transcriptional regulator, lysR family, at 66,746 to 67,624
_c00660
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 63.739 kb on + strand at 63.739 kb on + strand at 63.739 kb on + strand at 63.739 kb on + strand at 63.744 kb on + strand at 63.747 kb on - strand at 63.751 kb on + strand at 63.759 kb on - strand at 63.759 kb on - strand at 63.812 kb on - strand at 63.838 kb on + strand at 63.903 kb on + strand at 63.911 kb on - strand at 63.931 kb on + strand at 63.931 kb on + strand at 63.939 kb on - strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 63.997 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.005 kb on - strand at 64.005 kb on - strand at 64.005 kb on - strand at 64.005 kb on - strand at 64.005 kb on - strand at 64.010 kb on - strand at 64.010 kb on - strand at 64.010 kb on - strand at 64.058 kb on + strand at 64.073 kb on - strand at 64.077 kb on - strand at 64.084 kb on + strand at 64.099 kb on - strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.106 kb on + strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.119 kb on + strand at 64.132 kb on - strand at 64.154 kb on - strand at 64.154 kb on - strand at 64.159 kb on - strand at 64.159 kb on - strand at 64.190 kb on - strand at 64.203 kb on + strand at 64.346 kb on - strand, within PGA1_c00640 at 64.394 kb on + strand, within PGA1_c00640 at 64.394 kb on + strand, within PGA1_c00640 at 64.399 kb on + strand, within PGA1_c00640 at 64.407 kb on - strand, within PGA1_c00640 at 64.440 kb on - strand, within PGA1_c00640 at 64.442 kb on + strand, within PGA1_c00640 at 64.496 kb on + strand, within PGA1_c00640 at 64.496 kb on + strand, within PGA1_c00640 at 64.498 kb on + strand, within PGA1_c00640 at 64.499 kb on - strand, within PGA1_c00640 at 64.506 kb on - strand, within PGA1_c00640 at 64.506 kb on - strand, within PGA1_c00640 at 64.529 kb on - strand, within PGA1_c00640 at 64.542 kb on + strand, within PGA1_c00640 at 64.555 kb on + strand, within PGA1_c00640 at 64.624 kb on - strand, within PGA1_c00640 at 64.646 kb on - strand, within PGA1_c00640 at 64.696 kb on + strand, within PGA1_c00640 at 64.781 kb on - strand, within PGA1_c00640 at 64.781 kb on - strand, within PGA1_c00640 at 64.799 kb on + strand, within PGA1_c00640 at 64.822 kb on - strand, within PGA1_c00640 at 64.857 kb on - strand, within PGA1_c00640 at 64.895 kb on + strand, within PGA1_c00640 at 64.928 kb on + strand, within PGA1_c00640 at 64.928 kb on + strand, within PGA1_c00640 at 64.940 kb on + strand, within PGA1_c00640 at 64.940 kb on + strand, within PGA1_c00640 at 64.948 kb on - strand, within PGA1_c00640 at 64.998 kb on + strand, within PGA1_c00640 at 65.029 kb on + strand, within PGA1_c00640 at 65.029 kb on + strand, within PGA1_c00640 at 65.037 kb on - strand, within PGA1_c00640 at 65.037 kb on - strand, within PGA1_c00640 at 65.039 kb on + strand, within PGA1_c00640 at 65.071 kb on + strand, within PGA1_c00640 at 65.125 kb on + strand, within PGA1_c00640 at 65.127 kb on + strand, within PGA1_c00640 at 65.159 kb on + strand, within PGA1_c00640 at 65.159 kb on + strand, within PGA1_c00640 at 65.167 kb on - strand, within PGA1_c00640 at 65.174 kb on - strand, within PGA1_c00640 at 65.176 kb on + strand, within PGA1_c00640 at 65.250 kb on + strand, within PGA1_c00640 at 65.258 kb on - strand, within PGA1_c00640 at 65.335 kb on + strand, within PGA1_c00640 at 65.335 kb on + strand, within PGA1_c00640 at 65.367 kb on + strand, within PGA1_c00640 at 65.454 kb on + strand, within PGA1_c00640 at 65.462 kb on - strand, within PGA1_c00640 at 65.462 kb on - strand, within PGA1_c00640 at 65.462 kb on - strand, within PGA1_c00640 at 65.507 kb on + strand, within PGA1_c00640 at 65.507 kb on + strand, within PGA1_c00640 at 65.508 kb on + strand, within PGA1_c00640 at 65.515 kb on + strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.515 kb on - strand, within PGA1_c00640 at 65.516 kb on - strand, within PGA1_c00640 at 65.520 kb on + strand, within PGA1_c00640 at 65.523 kb on + strand, within PGA1_c00640 at 65.533 kb on - strand, within PGA1_c00640 at 65.533 kb on - strand, within PGA1_c00640 at 65.533 kb on - strand, within PGA1_c00640 at 65.580 kb on + strand, within PGA1_c00640 at 65.615 kb on - strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.617 kb on + strand, within PGA1_c00640 at 65.633 kb on + strand, within PGA1_c00640 at 65.641 kb on - strand, within PGA1_c00640 at 65.680 kb on + strand, within PGA1_c00640 at 65.716 kb on - strand, within PGA1_c00640 at 65.763 kb on + strand, within PGA1_c00640 at 65.778 kb on - strand, within PGA1_c00640 at 65.799 kb on + strand, within PGA1_c00640 at 65.826 kb on + strand at 65.831 kb on + strand at 65.831 kb on + strand at 65.839 kb on - strand at 65.839 kb on - strand at 65.839 kb on - strand at 65.845 kb on + strand at 65.845 kb on + strand at 65.845 kb on + strand at 65.901 kb on + strand at 65.910 kb on + strand at 65.918 kb on + strand at 65.919 kb on - strand at 66.007 kb on + strand at 66.052 kb on + strand at 66.103 kb on - strand at 66.113 kb on - strand at 66.127 kb on - strand at 66.127 kb on - strand at 66.146 kb on - strand at 66.201 kb on + strand, within PGA1_c00650 at 66.202 kb on - strand, within PGA1_c00650 at 66.209 kb on + strand, within PGA1_c00650 at 66.220 kb on - strand, within PGA1_c00650 at 66.227 kb on + strand, within PGA1_c00650 at 66.235 kb on - strand, within PGA1_c00650 at 66.296 kb on + strand, within PGA1_c00650 at 66.296 kb on + strand, within PGA1_c00650 at 66.336 kb on - strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.338 kb on + strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.346 kb on - strand, within PGA1_c00650 at 66.391 kb on - strand, within PGA1_c00650 at 66.427 kb on + strand, within PGA1_c00650 at 66.442 kb on - strand, within PGA1_c00650 at 66.474 kb on + strand, within PGA1_c00650 at 66.518 kb on - strand, within PGA1_c00650 at 66.518 kb on - strand, within PGA1_c00650 at 66.523 kb on - strand, within PGA1_c00650 at 66.540 kb on - strand, within PGA1_c00650 at 66.569 kb on + strand, within PGA1_c00650 at 66.569 kb on + strand, within PGA1_c00650 at 66.574 kb on + strand, within PGA1_c00650 at 66.577 kb on - strand, within PGA1_c00650 at 66.582 kb on - strand, within PGA1_c00650 at 66.641 kb on - strand at 66.641 kb on - strand at 66.641 kb on - strand at 66.641 kb on - strand at 66.705 kb on + strand at 66.730 kb on - strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.732 kb on + strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.740 kb on - strand at 66.745 kb on - strand at 66.771 kb on - strand at 66.850 kb on - strand, within PGA1_c00660 at 66.871 kb on - strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.955 kb on + strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.963 kb on - strand, within PGA1_c00660 at 66.991 kb on + strand, within PGA1_c00660 at 66.998 kb on + strand, within PGA1_c00660 at 66.999 kb on + strand, within PGA1_c00660
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 63,739 + +0.9 63,739 + -0.1 63,739 + -1.6 63,739 + -0.2 63,744 + -0.4 63,747 - -0.6 63,751 + -0.2 63,759 - -0.5 63,759 - +1.1 63,812 - +0.4 63,838 + +0.4 63,903 + -0.7 63,911 - -0.3 63,931 + -0.9 63,931 + -0.3 63,939 - -1.4 63,997 + -0.6 63,997 + -2.7 63,997 + +0.9 63,997 + +0.9 63,997 + -0.2 63,997 + -0.5 63,997 + -0.7 63,997 + +0.3 64,002 + +0.0 64,002 + -0.5 64,005 - -3.1 64,005 - +0.4 64,005 - -1.2 64,005 - +0.4 64,005 - -0.1 64,010 - -0.1 64,010 - +0.4 64,010 - +0.9 64,058 + +0.3 64,073 - -1.7 64,077 - +1.3 64,084 + +1.0 64,099 - -0.9 64,106 + -0.9 64,106 + +0.7 64,106 + +1.7 64,106 + -0.9 64,106 + -0.7 64,106 + -1.8 64,106 + -0.2 64,106 + +2.1 64,106 + +0.1 64,106 + +0.2 64,114 - -2.3 64,114 - +0.2 64,114 - -2.6 64,114 - -0.1 64,114 - +1.4 64,114 - +0.2 64,114 - +1.4 64,114 - -0.1 64,114 - -1.4 64,119 + -1.0 64,132 - -2.3 64,154 - -0.4 64,154 - +1.0 64,159 - -1.1 64,159 - +0.2 64,190 - +1.9 64,203 + -1.1 64,346 - PGA1_c00640 0.17 -2.6 64,394 + PGA1_c00640 0.19 -0.6 64,394 + PGA1_c00640 0.19 -0.6 64,399 + PGA1_c00640 0.20 -1.8 64,407 - PGA1_c00640 0.20 +0.6 64,440 - PGA1_c00640 0.22 -0.4 64,442 + PGA1_c00640 0.22 -0.3 64,496 + PGA1_c00640 0.24 -3.7 64,496 + PGA1_c00640 0.24 -0.8 64,498 + PGA1_c00640 0.25 -1.7 64,499 - PGA1_c00640 0.25 -2.3 64,506 - PGA1_c00640 0.25 -3.7 64,506 - PGA1_c00640 0.25 +2.7 64,529 - PGA1_c00640 0.26 -1.3 64,542 + PGA1_c00640 0.27 -0.5 64,555 + PGA1_c00640 0.27 -2.3 64,624 - PGA1_c00640 0.31 +0.2 64,646 - PGA1_c00640 0.32 +0.1 64,696 + PGA1_c00640 0.34 -0.9 64,781 - PGA1_c00640 0.39 -1.4 64,781 - PGA1_c00640 0.39 -0.7 64,799 + PGA1_c00640 0.40 +1.6 64,822 - PGA1_c00640 0.41 -3.2 64,857 - PGA1_c00640 0.43 -1.4 64,895 + PGA1_c00640 0.44 +0.7 64,928 + PGA1_c00640 0.46 -0.7 64,928 + PGA1_c00640 0.46 -2.1 64,940 + PGA1_c00640 0.47 -2.0 64,940 + PGA1_c00640 0.47 -2.0 64,948 - PGA1_c00640 0.47 -2.3 64,998 + PGA1_c00640 0.50 +0.3 65,029 + PGA1_c00640 0.51 +0.1 65,029 + PGA1_c00640 0.51 +0.0 65,037 - PGA1_c00640 0.52 +2.4 65,037 - PGA1_c00640 0.52 -2.0 65,039 + PGA1_c00640 0.52 +0.1 65,071 + PGA1_c00640 0.53 -0.7 65,125 + PGA1_c00640 0.56 -2.1 65,127 + PGA1_c00640 0.56 -1.9 65,159 + PGA1_c00640 0.58 +0.7 65,159 + PGA1_c00640 0.58 +0.1 65,167 - PGA1_c00640 0.58 -0.7 65,174 - PGA1_c00640 0.58 -1.6 65,176 + PGA1_c00640 0.59 -0.3 65,250 + PGA1_c00640 0.62 -0.6 65,258 - PGA1_c00640 0.63 +0.3 65,335 + PGA1_c00640 0.67 -2.6 65,335 + PGA1_c00640 0.67 +1.4 65,367 + PGA1_c00640 0.68 -2.4 65,454 + PGA1_c00640 0.72 +0.5 65,462 - PGA1_c00640 0.73 -0.9 65,462 - PGA1_c00640 0.73 +0.3 65,462 - PGA1_c00640 0.73 +0.3 65,507 + PGA1_c00640 0.75 +1.0 65,507 + PGA1_c00640 0.75 +1.2 65,508 + PGA1_c00640 0.75 -1.4 65,515 + PGA1_c00640 0.76 +1.3 65,515 - PGA1_c00640 0.76 -1.3 65,515 - PGA1_c00640 0.76 +0.8 65,515 - PGA1_c00640 0.76 -0.9 65,515 - PGA1_c00640 0.76 +0.3 65,515 - PGA1_c00640 0.76 +1.6 65,515 - PGA1_c00640 0.76 +0.3 65,516 - PGA1_c00640 0.76 +0.5 65,520 + PGA1_c00640 0.76 -0.5 65,523 + PGA1_c00640 0.76 -3.4 65,533 - PGA1_c00640 0.76 +0.2 65,533 - PGA1_c00640 0.76 +1.0 65,533 - PGA1_c00640 0.76 +0.2 65,580 + PGA1_c00640 0.79 -1.1 65,615 - PGA1_c00640 0.81 +0.1 65,617 + PGA1_c00640 0.81 +0.8 65,617 + PGA1_c00640 0.81 -0.0 65,617 + PGA1_c00640 0.81 -1.0 65,617 + PGA1_c00640 0.81 -3.8 65,617 + PGA1_c00640 0.81 -1.1 65,617 + PGA1_c00640 0.81 +1.8 65,633 + PGA1_c00640 0.81 +0.0 65,641 - PGA1_c00640 0.82 +0.0 65,680 + PGA1_c00640 0.84 -2.0 65,716 - PGA1_c00640 0.86 +2.0 65,763 + PGA1_c00640 0.88 +0.2 65,778 - PGA1_c00640 0.89 +0.6 65,799 + PGA1_c00640 0.90 -0.3 65,826 + -1.1 65,831 + -0.5 65,831 + +0.3 65,839 - -0.8 65,839 - -0.7 65,839 - -0.1 65,845 + -0.3 65,845 + -1.0 65,845 + +1.7 65,901 + -1.9 65,910 + -3.1 65,918 + +0.2 65,919 - -1.4 66,007 + -0.4 66,052 + -1.5 66,103 - +2.1 66,113 - +0.3 66,127 - -2.3 66,127 - +0.6 66,146 - -0.3 66,201 + PGA1_c00650 0.17 +0.6 66,202 - PGA1_c00650 0.17 -0.7 66,209 + PGA1_c00650 0.18 +0.0 66,220 - PGA1_c00650 0.20 +0.5 66,227 + PGA1_c00650 0.22 -3.1 66,235 - PGA1_c00650 0.23 +0.2 66,296 + PGA1_c00650 0.35 +1.9 66,296 + PGA1_c00650 0.35 -1.5 66,336 - PGA1_c00650 0.42 -0.1 66,338 + PGA1_c00650 0.43 +1.1 66,338 + PGA1_c00650 0.43 -2.4 66,338 + PGA1_c00650 0.43 +0.2 66,338 + PGA1_c00650 0.43 +0.9 66,338 + PGA1_c00650 0.43 -1.4 66,338 + PGA1_c00650 0.43 +1.0 66,338 + PGA1_c00650 0.43 +1.1 66,338 + PGA1_c00650 0.43 -1.9 66,338 + PGA1_c00650 0.43 +1.0 66,338 + PGA1_c00650 0.43 +1.4 66,338 + PGA1_c00650 0.43 -0.6 66,338 + PGA1_c00650 0.43 -1.1 66,338 + PGA1_c00650 0.43 -1.0 66,338 + PGA1_c00650 0.43 +0.6 66,338 + PGA1_c00650 0.43 +0.3 66,338 + PGA1_c00650 0.43 -0.9 66,346 - PGA1_c00650 0.44 -1.6 66,346 - PGA1_c00650 0.44 +0.4 66,346 - PGA1_c00650 0.44 +0.5 66,346 - PGA1_c00650 0.44 +0.6 66,346 - PGA1_c00650 0.44 +0.6 66,346 - PGA1_c00650 0.44 -1.4 66,391 - PGA1_c00650 0.53 +0.1 66,427 + PGA1_c00650 0.60 +0.4 66,442 - PGA1_c00650 0.62 -2.6 66,474 + PGA1_c00650 0.69 -0.5 66,518 - PGA1_c00650 0.77 -0.6 66,518 - PGA1_c00650 0.77 +1.8 66,523 - PGA1_c00650 0.78 +0.8 66,540 - PGA1_c00650 0.81 -2.1 66,569 + PGA1_c00650 0.87 +0.2 66,569 + PGA1_c00650 0.87 -1.6 66,574 + PGA1_c00650 0.88 +0.7 66,577 - PGA1_c00650 0.88 +0.5 66,582 - PGA1_c00650 0.89 +2.3 66,641 - +0.9 66,641 - -0.0 66,641 - -1.1 66,641 - +0.7 66,705 + -0.1 66,730 - +1.0 66,732 + +0.4 66,732 + +0.0 66,732 + +0.3 66,732 + +1.0 66,732 + -0.3 66,732 + +0.5 66,732 + -0.1 66,740 - -0.0 66,740 - -2.4 66,740 - -0.6 66,740 - -2.3 66,740 - -0.1 66,740 - +2.0 66,740 - -0.6 66,740 - -0.7 66,740 - -0.4 66,740 - -1.7 66,745 - +0.9 66,771 - -1.2 66,850 - PGA1_c00660 0.12 +0.7 66,871 - PGA1_c00660 0.14 -0.4 66,955 + PGA1_c00660 0.24 +0.7 66,955 + PGA1_c00660 0.24 -0.9 66,955 + PGA1_c00660 0.24 -0.5 66,955 + PGA1_c00660 0.24 +0.1 66,963 - PGA1_c00660 0.25 +0.3 66,963 - PGA1_c00660 0.25 +0.7 66,963 - PGA1_c00660 0.25 +0.9 66,963 - PGA1_c00660 0.25 +0.3 66,991 + PGA1_c00660 0.28 -1.4 66,998 + PGA1_c00660 0.29 +0.2 66,999 + PGA1_c00660 0.29 +0.7
Or see this region's nucleotide sequence