Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05020 and PGA1_c05040 are separated by 670 nucleotides PGA1_c05040 and PGA1_c05050 are separated by 311 nucleotides PGA1_c05050 and PGA1_c05060 are separated by 124 nucleotides
PGA1_c05020: PGA1_c05020 - phenylacetic acid degradation NADH oxidoreductase, at 496,421 to 497,506
_c05020
PGA1_c05040: PGA1_c05040 - transposase, at 498,177 to 498,566
_c05040
PGA1_c05050: PGA1_c05050 - tRNA-Ser, at 498,878 to 498,967
_c05050
PGA1_c05060: PGA1_c05060 - putative short chain dehydrogenase, at 499,092 to 499,790
_c05060
Position (kb) 498
499 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 497.213 kb on + strand, within PGA1_c05020 at 497.236 kb on - strand, within PGA1_c05020 at 497.236 kb on - strand, within PGA1_c05020 at 497.236 kb on - strand, within PGA1_c05020 at 497.247 kb on + strand, within PGA1_c05020 at 497.268 kb on + strand, within PGA1_c05020 at 497.269 kb on + strand, within PGA1_c05020 at 497.269 kb on + strand, within PGA1_c05020 at 497.277 kb on - strand, within PGA1_c05020 at 497.281 kb on - strand, within PGA1_c05020 at 497.308 kb on - strand, within PGA1_c05020 at 497.308 kb on - strand, within PGA1_c05020 at 497.314 kb on - strand, within PGA1_c05020 at 497.314 kb on - strand, within PGA1_c05020 at 497.314 kb on - strand, within PGA1_c05020 at 497.350 kb on - strand, within PGA1_c05020 at 497.355 kb on + strand, within PGA1_c05020 at 497.373 kb on + strand, within PGA1_c05020 at 497.424 kb on - strand at 497.440 kb on + strand at 497.448 kb on - strand at 497.450 kb on + strand at 497.450 kb on + strand at 497.458 kb on - strand at 497.458 kb on - strand at 497.469 kb on + strand at 497.469 kb on + strand at 497.472 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.478 kb on - strand at 497.520 kb on + strand at 497.525 kb on + strand at 497.525 kb on + strand at 497.528 kb on - strand at 497.528 kb on - strand at 497.528 kb on - strand at 497.580 kb on - strand at 498.635 kb on - strand at 498.659 kb on + strand at 498.680 kb on + strand at 498.693 kb on - strand at 498.718 kb on - strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.748 kb on - strand at 498.748 kb on - strand at 498.748 kb on - strand at 498.755 kb on + strand at 498.986 kb on + strand at 499.004 kb on - strand at 499.015 kb on + strand at 499.066 kb on - strand at 499.078 kb on + strand at 499.113 kb on + strand at 499.121 kb on - strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.124 kb on + strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.151 kb on + strand at 499.175 kb on - strand, within PGA1_c05060 at 499.197 kb on + strand, within PGA1_c05060 at 499.197 kb on + strand, within PGA1_c05060 at 499.205 kb on - strand, within PGA1_c05060 at 499.210 kb on - strand, within PGA1_c05060 at 499.262 kb on - strand, within PGA1_c05060 at 499.262 kb on - strand, within PGA1_c05060 at 499.263 kb on + strand, within PGA1_c05060 at 499.276 kb on - strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.306 kb on + strand, within PGA1_c05060 at 499.308 kb on + strand, within PGA1_c05060 at 499.352 kb on + strand, within PGA1_c05060 at 499.407 kb on - strand, within PGA1_c05060 at 499.449 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.530 kb on + strand, within PGA1_c05060 at 499.532 kb on - strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.553 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 497,213 + PGA1_c05020 0.73 -2.4 497,236 - PGA1_c05020 0.75 -2.4 497,236 - PGA1_c05020 0.75 +0.8 497,236 - PGA1_c05020 0.75 -1.4 497,247 + PGA1_c05020 0.76 -2.7 497,268 + PGA1_c05020 0.78 +2.0 497,269 + PGA1_c05020 0.78 -0.6 497,269 + PGA1_c05020 0.78 -1.5 497,277 - PGA1_c05020 0.79 -1.8 497,281 - PGA1_c05020 0.79 +1.1 497,308 - PGA1_c05020 0.82 +0.2 497,308 - PGA1_c05020 0.82 +0.9 497,314 - PGA1_c05020 0.82 -2.1 497,314 - PGA1_c05020 0.82 +0.1 497,314 - PGA1_c05020 0.82 +0.5 497,350 - PGA1_c05020 0.86 +0.4 497,355 + PGA1_c05020 0.86 +0.4 497,373 + PGA1_c05020 0.88 +0.6 497,424 - -1.9 497,440 + -1.7 497,448 - -0.3 497,450 + +0.4 497,450 + -1.9 497,458 - -0.5 497,458 - -1.1 497,469 + +1.5 497,469 + -0.4 497,472 - +0.1 497,477 - -0.7 497,477 - -3.9 497,477 - +1.1 497,477 - -0.8 497,477 - +1.5 497,477 - +0.1 497,477 - +0.5 497,478 - -0.1 497,520 + -1.2 497,525 + +0.7 497,525 + -1.8 497,528 - +1.6 497,528 - -1.3 497,528 - +1.0 497,580 - +0.3 498,635 - +0.4 498,659 + -0.5 498,680 + -0.5 498,693 - +1.0 498,718 - -1.7 498,740 + +0.8 498,740 + -1.1 498,740 + +0.4 498,740 + -0.5 498,748 - -0.8 498,748 - +1.3 498,748 - +1.6 498,755 + -0.8 498,986 + -0.7 499,004 - -0.8 499,015 + -1.2 499,066 - -2.9 499,078 + +2.1 499,113 + -3.4 499,121 - -0.5 499,123 + +0.4 499,123 + +0.5 499,123 + -2.1 499,123 + -1.6 499,123 + -0.1 499,124 + +0.1 499,131 - +0.9 499,131 - +0.3 499,131 - +1.1 499,131 - +0.6 499,131 - -0.7 499,131 - +1.1 499,131 - +1.2 499,131 - -2.5 499,131 - +0.1 499,131 - -1.9 499,151 + -1.1 499,175 - PGA1_c05060 0.12 +0.1 499,197 + PGA1_c05060 0.15 +1.3 499,197 + PGA1_c05060 0.15 -1.4 499,205 - PGA1_c05060 0.16 +0.3 499,210 - PGA1_c05060 0.17 -0.7 499,262 - PGA1_c05060 0.24 -0.2 499,262 - PGA1_c05060 0.24 -1.1 499,263 + PGA1_c05060 0.24 +0.2 499,276 - PGA1_c05060 0.26 +0.3 499,280 + PGA1_c05060 0.27 -1.2 499,280 + PGA1_c05060 0.27 -2.2 499,280 + PGA1_c05060 0.27 +0.5 499,289 + PGA1_c05060 0.28 -0.4 499,289 + PGA1_c05060 0.28 -1.5 499,289 + PGA1_c05060 0.28 -0.6 499,289 + PGA1_c05060 0.28 -2.7 499,289 + PGA1_c05060 0.28 -1.2 499,289 + PGA1_c05060 0.28 +0.8 499,289 + PGA1_c05060 0.28 +1.5 499,289 + PGA1_c05060 0.28 +0.3 499,289 + PGA1_c05060 0.28 +0.5 499,289 + PGA1_c05060 0.28 +0.9 499,289 + PGA1_c05060 0.28 +1.0 499,289 + PGA1_c05060 0.28 -0.1 499,289 + PGA1_c05060 0.28 +1.0 499,289 + PGA1_c05060 0.28 -0.3 499,289 + PGA1_c05060 0.28 -0.1 499,289 + PGA1_c05060 0.28 -0.8 499,289 + PGA1_c05060 0.28 +0.8 499,289 + PGA1_c05060 0.28 +2.0 499,289 + PGA1_c05060 0.28 +0.8 499,289 + PGA1_c05060 0.28 -1.0 499,289 + PGA1_c05060 0.28 +1.4 499,289 + PGA1_c05060 0.28 -0.9 499,289 + PGA1_c05060 0.28 -0.6 499,289 + PGA1_c05060 0.28 -1.1 499,289 + PGA1_c05060 0.28 -1.0 499,289 + PGA1_c05060 0.28 -2.7 499,289 + PGA1_c05060 0.28 +0.5 499,297 - PGA1_c05060 0.29 +0.7 499,297 - PGA1_c05060 0.29 -1.5 499,297 - PGA1_c05060 0.29 -0.1 499,297 - PGA1_c05060 0.29 -0.5 499,297 - PGA1_c05060 0.29 -0.6 499,297 - PGA1_c05060 0.29 +0.6 499,297 - PGA1_c05060 0.29 -0.5 499,297 - PGA1_c05060 0.29 -0.3 499,297 - PGA1_c05060 0.29 +0.5 499,297 - PGA1_c05060 0.29 +0.4 499,297 - PGA1_c05060 0.29 -1.6 499,297 - PGA1_c05060 0.29 -0.6 499,297 - PGA1_c05060 0.29 +0.0 499,297 - PGA1_c05060 0.29 -1.1 499,297 - PGA1_c05060 0.29 -2.5 499,306 + PGA1_c05060 0.31 -0.4 499,308 + PGA1_c05060 0.31 -0.0 499,352 + PGA1_c05060 0.37 +0.1 499,407 - PGA1_c05060 0.45 -0.1 499,449 + PGA1_c05060 0.51 -0.8 499,524 + PGA1_c05060 0.62 +1.0 499,524 + PGA1_c05060 0.62 -2.4 499,524 + PGA1_c05060 0.62 -0.4 499,530 + PGA1_c05060 0.63 +0.2 499,532 - PGA1_c05060 0.63 +0.1 499,545 + PGA1_c05060 0.65 +0.1 499,545 + PGA1_c05060 0.65 +1.9 499,545 + PGA1_c05060 0.65 -0.9 499,550 + PGA1_c05060 0.66 -0.3 499,550 + PGA1_c05060 0.66 -1.4 499,550 + PGA1_c05060 0.66 -3.1 499,550 + PGA1_c05060 0.66 -0.9 499,553 - PGA1_c05060 0.66 +0.3 499,558 - PGA1_c05060 0.67 +0.9 499,558 - PGA1_c05060 0.67 -1.4 499,558 - PGA1_c05060 0.67 +0.1
Or see this region's nucleotide sequence