Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02330 and PGA1_262p02340 overlap by 4 nucleotides PGA1_262p02340 and PGA1_262p02350 are separated by 104 nucleotides PGA1_262p02350 and PGA1_262p02360 are separated by 40 nucleotides PGA1_262p02360 and PGA1_262p02370 are separated by 9 nucleotides
PGA1_262p02330: PGA1_262p02330 - putative aspartate aminotransferase, at 255,447 to 256,634
_262p02330
PGA1_262p02340: PGA1_262p02340 - putative transcriptional regulator, TetR family, at 256,631 to 257,278
_262p02340
PGA1_262p02350: PGA1_262p02350 - histidine transport ATP-binding protein HisP, at 257,383 to 258,228
_262p02350
PGA1_262p02360: PGA1_262p02360 - putative histidine-binding periplasmic protein, at 258,269 to 259,048
_262p02360
PGA1_262p02370: PGA1_262p02370 - putative histidine transport system permease protein HisQ, at 259,058 to 259,810
_262p02370
Position (kb) 257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 256.432 kb on - strand, within PGA1_262p02330 at 256.490 kb on + strand, within PGA1_262p02330 at 256.509 kb on + strand, within PGA1_262p02330 at 256.575 kb on - strand at 256.585 kb on - strand at 256.609 kb on + strand at 256.644 kb on + strand at 256.652 kb on - strand at 256.666 kb on - strand at 257.175 kb on - strand, within PGA1_262p02340 at 257.287 kb on + strand at 257.295 kb on - strand at 257.300 kb on + strand at 257.445 kb on - strand at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.570 kb on - strand, within PGA1_262p02350 at 257.619 kb on - strand, within PGA1_262p02350 at 257.676 kb on - strand, within PGA1_262p02350 at 257.699 kb on + strand, within PGA1_262p02350 at 257.737 kb on + strand, within PGA1_262p02350 at 257.742 kb on + strand, within PGA1_262p02350 at 257.745 kb on - strand, within PGA1_262p02350 at 257.852 kb on - strand, within PGA1_262p02350 at 257.852 kb on - strand, within PGA1_262p02350 at 258.018 kb on + strand, within PGA1_262p02350 at 258.197 kb on + strand at 258.439 kb on + strand, within PGA1_262p02360 at 258.439 kb on + strand, within PGA1_262p02360 at 258.477 kb on - strand, within PGA1_262p02360 at 258.501 kb on + strand, within PGA1_262p02360 at 258.691 kb on + strand, within PGA1_262p02360 at 258.761 kb on - strand, within PGA1_262p02360 at 258.795 kb on + strand, within PGA1_262p02360 at 258.876 kb on - strand, within PGA1_262p02360 at 258.877 kb on - strand, within PGA1_262p02360 at 258.931 kb on - strand, within PGA1_262p02360 at 259.041 kb on - strand at 259.046 kb on - strand at 259.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 256,432 - PGA1_262p02330 0.83 -1.9 256,490 + PGA1_262p02330 0.88 +2.8 256,509 + PGA1_262p02330 0.89 +0.4 256,575 - +0.2 256,585 - -0.9 256,609 + +1.2 256,644 + -0.4 256,652 - -1.8 256,666 - +0.2 257,175 - PGA1_262p02340 0.84 +1.6 257,287 + -2.9 257,295 - +1.9 257,300 + -0.5 257,445 - -2.7 257,532 + PGA1_262p02350 0.18 -2.4 257,532 + PGA1_262p02350 0.18 +0.8 257,532 + PGA1_262p02350 0.18 +0.2 257,540 + PGA1_262p02350 0.19 +1.9 257,540 + PGA1_262p02350 0.19 +2.2 257,570 - PGA1_262p02350 0.22 +0.2 257,619 - PGA1_262p02350 0.28 +0.6 257,676 - PGA1_262p02350 0.35 +0.8 257,699 + PGA1_262p02350 0.37 +2.6 257,737 + PGA1_262p02350 0.42 -2.2 257,742 + PGA1_262p02350 0.42 -0.8 257,745 - PGA1_262p02350 0.43 +1.6 257,852 - PGA1_262p02350 0.55 +2.2 257,852 - PGA1_262p02350 0.55 -1.6 258,018 + PGA1_262p02350 0.75 +0.0 258,197 + -1.5 258,439 + PGA1_262p02360 0.22 +2.4 258,439 + PGA1_262p02360 0.22 +0.8 258,477 - PGA1_262p02360 0.27 -0.1 258,501 + PGA1_262p02360 0.30 +0.2 258,691 + PGA1_262p02360 0.54 +1.5 258,761 - PGA1_262p02360 0.63 -0.8 258,795 + PGA1_262p02360 0.67 +1.5 258,876 - PGA1_262p02360 0.78 +1.3 258,877 - PGA1_262p02360 0.78 +0.2 258,931 - PGA1_262p02360 0.85 +2.0 259,041 - -0.1 259,046 - -1.1 259,095 - +1.5
Or see this region's nucleotide sequence