Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01200 and PGA1_262p01210 are separated by 4 nucleotides PGA1_262p01210 and PGA1_262p01220 are separated by 3 nucleotides PGA1_262p01220 and PGA1_262p01230 are separated by 12 nucleotides PGA1_262p01230 and PGA1_262p01240 are separated by 130 nucleotides PGA1_262p01240 and PGA1_262p01250 are separated by 74 nucleotides
PGA1_262p01200: PGA1_262p01200 - putative protein NorD, at 131,338 to 133,275
_262p01200
PGA1_262p01210: PGA1_262p01210 - putative protein NorQ, at 133,280 to 134,074
_262p01210
PGA1_262p01220: PGA1_262p01220 - nitric oxide reductase subunit B, at 134,078 to 135,436
_262p01220
PGA1_262p01230: PGA1_262p01230 - nitric oxide reductase subunit C, at 135,449 to 135,901
_262p01230
PGA1_262p01240: PGA1_262p01240 - hydrid cluster protein-associated redox disulfide domain, at 136,032 to 136,259
_262p01240
PGA1_262p01250: PGA1_262p01250 - transcriptional regulator, crp family, at 136,334 to 137,038
_262p01250
Position (kb) 134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2 at 133.290 kb on - strand at 133.407 kb on + strand, within PGA1_262p01210 at 133.438 kb on + strand, within PGA1_262p01210 at 133.507 kb on + strand, within PGA1_262p01210 at 133.607 kb on - strand, within PGA1_262p01210 at 133.618 kb on - strand, within PGA1_262p01210 at 133.796 kb on - strand, within PGA1_262p01210 at 133.821 kb on + strand, within PGA1_262p01210 at 133.982 kb on + strand, within PGA1_262p01210 at 133.988 kb on + strand, within PGA1_262p01210 at 134.107 kb on - strand at 134.108 kb on - strand at 134.239 kb on - strand, within PGA1_262p01220 at 134.374 kb on - strand, within PGA1_262p01220 at 134.433 kb on - strand, within PGA1_262p01220 at 134.479 kb on - strand, within PGA1_262p01220 at 134.566 kb on - strand, within PGA1_262p01220 at 134.657 kb on - strand, within PGA1_262p01220 at 134.813 kb on - strand, within PGA1_262p01220 at 134.879 kb on + strand, within PGA1_262p01220 at 134.951 kb on - strand, within PGA1_262p01220 at 134.971 kb on - strand, within PGA1_262p01220 at 135.018 kb on + strand, within PGA1_262p01220 at 135.313 kb on - strand at 135.446 kb on + strand at 135.454 kb on - strand at 135.454 kb on - strand at 135.473 kb on + strand at 135.746 kb on - strand, within PGA1_262p01230 at 135.897 kb on + strand at 135.903 kb on + strand at 135.910 kb on - strand at 136.009 kb on - strand at 136.153 kb on - strand, within PGA1_262p01240 at 136.225 kb on + strand, within PGA1_262p01240 at 136.298 kb on + strand at 136.304 kb on + strand at 136.304 kb on + strand at 136.317 kb on - strand at 136.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 133,290 - -0.9 133,407 + PGA1_262p01210 0.16 +0.3 133,438 + PGA1_262p01210 0.20 +0.9 133,507 + PGA1_262p01210 0.29 +0.4 133,607 - PGA1_262p01210 0.41 +0.4 133,618 - PGA1_262p01210 0.43 -0.9 133,796 - PGA1_262p01210 0.65 +0.4 133,821 + PGA1_262p01210 0.68 +0.2 133,982 + PGA1_262p01210 0.88 -2.6 133,988 + PGA1_262p01210 0.89 +1.1 134,107 - -0.2 134,108 - +0.9 134,239 - PGA1_262p01220 0.12 -0.9 134,374 - PGA1_262p01220 0.22 +0.7 134,433 - PGA1_262p01220 0.26 +0.9 134,479 - PGA1_262p01220 0.30 -0.4 134,566 - PGA1_262p01220 0.36 -1.2 134,657 - PGA1_262p01220 0.43 -0.7 134,813 - PGA1_262p01220 0.54 -0.2 134,879 + PGA1_262p01220 0.59 -1.5 134,951 - PGA1_262p01220 0.64 -0.9 134,971 - PGA1_262p01220 0.66 -0.0 135,018 + PGA1_262p01220 0.69 -1.8 135,313 - +0.6 135,446 + -0.5 135,454 - +0.6 135,454 - +0.4 135,473 + +0.5 135,746 - PGA1_262p01230 0.66 +0.5 135,897 + -1.0 135,903 + +0.4 135,910 - +1.2 136,009 - -0.8 136,153 - PGA1_262p01240 0.53 -1.4 136,225 + PGA1_262p01240 0.85 -0.6 136,298 + +1.9 136,304 + -0.7 136,304 + +1.1 136,317 - -1.2 136,364 - +0.4
Or see this region's nucleotide sequence