Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00520

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00510 and PGA1_262p00520 are separated by 193 nucleotidesPGA1_262p00520 and PGA1_262p00530 are separated by 9 nucleotides PGA1_262p00510: PGA1_262p00510 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 58,625 to 59,638 _262p00510 PGA1_262p00520: PGA1_262p00520 - putative multi antimicrobial extrusion protein, at 59,832 to 61,166 _262p00520 PGA1_262p00530: PGA1_262p00530 - DNA topoisomerase 1B-like protein, at 61,176 to 62,153 _262p00530 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.915 kb on - strand, within PGA1_262p00510at 58.923 kb on + strand, within PGA1_262p00510at 59.107 kb on - strand, within PGA1_262p00510at 59.342 kb on + strand, within PGA1_262p00510at 59.348 kb on - strand, within PGA1_262p00510at 59.348 kb on - strand, within PGA1_262p00510at 59.374 kb on + strand, within PGA1_262p00510at 59.374 kb on + strand, within PGA1_262p00510at 59.437 kb on - strand, within PGA1_262p00510at 59.482 kb on - strand, within PGA1_262p00510at 59.515 kb on + strand, within PGA1_262p00510at 59.559 kb on + strandat 59.590 kb on - strandat 59.681 kb on + strandat 59.753 kb on + strandat 59.816 kb on + strandat 59.956 kb on + strandat 59.985 kb on - strand, within PGA1_262p00520at 59.990 kb on + strand, within PGA1_262p00520at 59.993 kb on - strand, within PGA1_262p00520at 59.993 kb on - strand, within PGA1_262p00520at 59.998 kb on - strand, within PGA1_262p00520at 60.137 kb on + strand, within PGA1_262p00520at 60.166 kb on + strand, within PGA1_262p00520at 60.166 kb on + strand, within PGA1_262p00520at 60.340 kb on - strand, within PGA1_262p00520at 60.461 kb on + strand, within PGA1_262p00520at 60.569 kb on - strand, within PGA1_262p00520at 60.611 kb on + strand, within PGA1_262p00520at 60.661 kb on + strand, within PGA1_262p00520at 60.740 kb on + strand, within PGA1_262p00520at 60.807 kb on + strand, within PGA1_262p00520at 60.807 kb on + strand, within PGA1_262p00520at 60.826 kb on + strand, within PGA1_262p00520at 61.002 kb on + strand, within PGA1_262p00520at 61.137 kb on + strandat 61.226 kb on - strandat 61.249 kb on + strandat 61.272 kb on - strandat 61.389 kb on + strand, within PGA1_262p00530at 61.499 kb on + strand, within PGA1_262p00530at 61.595 kb on + strand, within PGA1_262p00530at 61.808 kb on - strand, within PGA1_262p00530at 61.867 kb on - strand, within PGA1_262p00530at 61.867 kb on - strand, within PGA1_262p00530at 62.111 kb on + strandat 62.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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58,915 - PGA1_262p00510 0.29 +0.4
58,923 + PGA1_262p00510 0.29 -0.9
59,107 - PGA1_262p00510 0.48 -3.3
59,342 + PGA1_262p00510 0.71 +0.7
59,348 - PGA1_262p00510 0.71 +0.5
59,348 - PGA1_262p00510 0.71 -2.6
59,374 + PGA1_262p00510 0.74 +0.6
59,374 + PGA1_262p00510 0.74 -1.1
59,437 - PGA1_262p00510 0.80 +0.5
59,482 - PGA1_262p00510 0.85 -1.9
59,515 + PGA1_262p00510 0.88 +0.6
59,559 + -0.4
59,590 - +0.0
59,681 + +1.1
59,753 + +0.2
59,816 + -1.6
59,956 + -1.1
59,985 - PGA1_262p00520 0.11 -2.9
59,990 + PGA1_262p00520 0.12 -0.7
59,993 - PGA1_262p00520 0.12 -2.2
59,993 - PGA1_262p00520 0.12 -1.3
59,998 - PGA1_262p00520 0.12 -1.2
60,137 + PGA1_262p00520 0.23 +1.0
60,166 + PGA1_262p00520 0.25 -1.7
60,166 + PGA1_262p00520 0.25 -2.6
60,340 - PGA1_262p00520 0.38 +0.2
60,461 + PGA1_262p00520 0.47 -1.0
60,569 - PGA1_262p00520 0.55 -2.4
60,611 + PGA1_262p00520 0.58 +0.6
60,661 + PGA1_262p00520 0.62 -0.2
60,740 + PGA1_262p00520 0.68 -0.6
60,807 + PGA1_262p00520 0.73 -1.0
60,807 + PGA1_262p00520 0.73 +2.4
60,826 + PGA1_262p00520 0.74 -1.6
61,002 + PGA1_262p00520 0.88 -1.9
61,137 + +0.2
61,226 - -0.5
61,249 + -1.8
61,272 - +0.1
61,389 + PGA1_262p00530 0.22 +0.6
61,499 + PGA1_262p00530 0.33 +0.1
61,595 + PGA1_262p00530 0.43 -1.3
61,808 - PGA1_262p00530 0.65 -0.2
61,867 - PGA1_262p00530 0.71 -0.2
61,867 - PGA1_262p00530 0.71 +0.5
62,111 + +1.6
62,129 - -0.1

Or see this region's nucleotide sequence