Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35000

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,671,257	+		PGA1_c34990	0.64	-0.9
3,671,272	+		PGA1_c34990	0.65	+0.6
3,671,303	+		PGA1_c34990	0.66	-0.9
3,671,308	+		PGA1_c34990	0.67	-2.0
3,671,311	-		PGA1_c34990	0.67	+1.0
3,671,311	-		PGA1_c34990	0.67	+0.8
3,671,311	-		PGA1_c34990	0.67	-2.3
3,671,313	+		PGA1_c34990	0.67	+1.3
3,671,349	-		PGA1_c34990	0.68	+2.1
3,671,349	-		PGA1_c34990	0.68	+0.0
3,671,439	-		PGA1_c34990	0.72	-3.0
3,671,441	+		PGA1_c34990	0.73	+1.4
3,671,449	-		PGA1_c34990	0.73	-0.8
3,671,524	+		PGA1_c34990	0.76	-0.4
3,671,529	+		PGA1_c34990	0.76	+0.5
3,671,537	-		PGA1_c34990	0.77	-0.3
3,671,547	+		PGA1_c34990	0.77	+2.1
3,671,555	-		PGA1_c34990	0.78	+0.0
3,671,555	-		PGA1_c34990	0.78	+1.7
3,671,557	+		PGA1_c34990	0.78	-1.6
3,671,560	-		PGA1_c34990	0.78	-0.1
3,671,565	-		PGA1_c34990	0.78	-0.2
3,671,581	+		PGA1_c34990	0.79	-0.3
3,671,674	-		PGA1_c34990	0.83	+2.0
3,671,689	+		PGA1_c34990	0.84	-2.3
3,671,697	-		PGA1_c34990	0.84	+0.2
3,671,702	+		PGA1_c34990	0.84	-0.1
3,671,755	+		PGA1_c34990	0.86	+0.9
3,671,763	-		PGA1_c34990	0.87	+1.4
3,671,763	-		PGA1_c34990	0.87	-2.5
3,671,773	-		PGA1_c34990	0.87	-0.1
3,671,773	-		PGA1_c34990	0.87	+1.0
3,671,773	-		PGA1_c34990	0.87	+0.5
3,671,778	-		PGA1_c34990	0.88	+0.5
3,671,804	+		PGA1_c34990	0.89	+1.4
3,671,820	+		PGA1_c34990	0.89	+0.3
3,671,828	-		PGA1_c34990	0.90	+0.8
3,671,967	+				-0.2
3,671,975	-				-3.0
3,672,061	+				+0.2
3,672,073	+				-0.7
3,672,084	+				-0.6
3,672,091	-				-3.0
3,672,092	+				+0.4
3,672,107	+				+0.3
3,672,107	+				+0.4
3,672,117	-				-2.8
3,672,149	-				-0.0
3,672,194	+				+0.8
3,672,204	-				-1.8
3,672,214	-				-0.5
3,672,228	+				-1.2
3,672,228	+				-2.3
3,672,236	-				-2.2
3,672,280	-				-1.8
3,672,333	+				-0.3
3,672,333	+				-0.5
3,672,396	+				+1.6
3,672,404	-				+0.5
3,672,425	+				+1.0
3,672,607	+		PGA1_c35000	0.15	-2.3
3,672,615	-		PGA1_c35000	0.16	-2.8
3,672,615	-		PGA1_c35000	0.16	+0.4
3,672,630	+		PGA1_c35000	0.16	-1.0
3,672,630	+		PGA1_c35000	0.16	-0.3
3,672,638	-		PGA1_c35000	0.16	-0.6
3,672,638	-		PGA1_c35000	0.16	-3.1
3,672,638	-		PGA1_c35000	0.16	+0.7
3,672,661	+		PGA1_c35000	0.17	-1.2
3,672,685	+		PGA1_c35000	0.18	+0.9
3,672,697	+		PGA1_c35000	0.19	-0.5
3,672,697	+		PGA1_c35000	0.19	-0.8
3,672,705	-		PGA1_c35000	0.19	+0.4
3,672,705	-		PGA1_c35000	0.19	+0.3
3,672,705	-		PGA1_c35000	0.19	+0.1
3,672,705	-		PGA1_c35000	0.19	-0.0
3,672,705	-		PGA1_c35000	0.19	+0.4
3,672,707	+		PGA1_c35000	0.19	+0.9
3,672,707	+		PGA1_c35000	0.19	+1.1
3,672,715	-		PGA1_c35000	0.19	+1.1
3,672,750	+		PGA1_c35000	0.21	-0.5
3,672,751	+		PGA1_c35000	0.21	-2.2
3,672,758	-		PGA1_c35000	0.21	-0.6
3,672,761	+		PGA1_c35000	0.21	-0.5
3,672,871	-		PGA1_c35000	0.25	-2.4
3,673,033	+		PGA1_c35000	0.31	-0.2
3,673,033	+		PGA1_c35000	0.31	+1.0
3,673,033	+		PGA1_c35000	0.31	+0.4
3,673,033	+		PGA1_c35000	0.31	+2.2
3,673,185	+		PGA1_c35000	0.37	+0.6
3,673,185	+		PGA1_c35000	0.37	+3.2
3,673,208	+		PGA1_c35000	0.38	-0.8
3,673,208	+		PGA1_c35000	0.38	+2.0
3,673,249	-		PGA1_c35000	0.40	-0.1
3,673,271	+		PGA1_c35000	0.41	+0.7
3,673,276	+		PGA1_c35000	0.41	-0.8
3,673,281	+		PGA1_c35000	0.41	+0.5
3,673,297	+		PGA1_c35000	0.41	-0.5
3,673,407	-		PGA1_c35000	0.46	+1.2
3,673,408	-		PGA1_c35000	0.46	+0.1
3,673,436	+		PGA1_c35000	0.47	-0.9
3,673,436	+		PGA1_c35000	0.47	-3.1
3,673,475	-		PGA1_c35000	0.48	-1.0
3,673,475	-		PGA1_c35000	0.48	-2.2
3,673,500	+		PGA1_c35000	0.49	-0.3
3,673,508	-		PGA1_c35000	0.50	-1.3
3,673,508	-		PGA1_c35000	0.50	-2.1
3,673,513	+		PGA1_c35000	0.50	-0.7
3,673,521	-		PGA1_c35000	0.50	+1.4
3,673,543	-		PGA1_c35000	0.51	-1.7
3,673,545	-		PGA1_c35000	0.51	-1.2
3,673,574	+		PGA1_c35000	0.52	-0.8
3,673,593	+		PGA1_c35000	0.53	-1.7
3,673,686	-		PGA1_c35000	0.56	+0.4
3,673,696	+		PGA1_c35000	0.57	-1.6
3,673,696	+		PGA1_c35000	0.57	-2.4
3,673,704	-		PGA1_c35000	0.57	+0.4
3,673,740	+		PGA1_c35000	0.58	-1.2
3,673,741	-		PGA1_c35000	0.58	-0.8
3,673,758	+		PGA1_c35000	0.59	-0.7
3,673,816	+		PGA1_c35000	0.61	-0.5
3,673,816	+		PGA1_c35000	0.61	+1.5
3,673,824	-		PGA1_c35000	0.62	-2.4
3,673,824	-		PGA1_c35000	0.62	-1.0
3,673,845	+		PGA1_c35000	0.62	+0.0
3,673,856	+		PGA1_c35000	0.63	+0.8
3,673,856	+		PGA1_c35000	0.63	+1.0
3,673,856	+		PGA1_c35000	0.63	+0.8
3,673,912	+		PGA1_c35000	0.65	-0.2
3,673,922	+		PGA1_c35000	0.65	-1.2
3,673,928	+		PGA1_c35000	0.65	+0.4
3,673,931	-		PGA1_c35000	0.66	-0.1
3,673,931	-		PGA1_c35000	0.66	+0.4
3,673,936	-		PGA1_c35000	0.66	-3.2
3,673,952	-		PGA1_c35000	0.66	-1.6
3,673,952	-		PGA1_c35000	0.66	-0.4
3,673,952	-		PGA1_c35000	0.66	+0.6
3,673,952	-		PGA1_c35000	0.66	+1.3
3,673,955	-		PGA1_c35000	0.66	-0.8
3,673,988	-		PGA1_c35000	0.68	+1.0
3,674,018	+		PGA1_c35000	0.69	-1.8
3,674,026	-		PGA1_c35000	0.69	-2.1
3,674,201	-		PGA1_c35000	0.76	-3.0
3,674,227	-		PGA1_c35000	0.77	-1.7
3,674,250	+		PGA1_c35000	0.78	-2.0
3,674,273	+		PGA1_c35000	0.79	-0.0
3,674,318	+		PGA1_c35000	0.80	-0.4
3,674,375	-		PGA1_c35000	0.82	+0.3
3,674,430	+		PGA1_c35000	0.85	-1.6
3,674,430	+		PGA1_c35000	0.85	+1.0
3,674,465	+		PGA1_c35000	0.86	-0.7
3,674,511	+		PGA1_c35000	0.88	-0.4
3,674,519	-		PGA1_c35000	0.88	-2.5
3,674,558	+		PGA1_c35000	0.89	-2.7
3,674,558	+		PGA1_c35000	0.89	+0.6
3,674,701	-				-0.2
3,674,754	+				-3.4
3,674,762	-				-1.8
3,674,862	-				+0.5
3,675,511	-				-2.3
3,675,553	+				-0.3
3,675,594	+				-1.5
3,675,627	-		PGA1_c35020	0.11	-3.7
3,675,642	+		PGA1_c35020	0.12	+0.4
3,675,642	+		PGA1_c35020	0.12	-1.2
3,675,650	-		PGA1_c35020	0.13	+0.5
3,675,664	-		PGA1_c35020	0.14	-1.7
3,675,716	+		PGA1_c35020	0.19	-3.0
3,675,724	-		PGA1_c35020	0.20	+0.0
3,675,814	+		PGA1_c35020	0.28	+0.8