Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20160

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
2,088,790	+		PGA1_c20140	0.64	+1.2
2,088,790	-		PGA1_c20140	0.64	+0.0
2,088,875	+		PGA1_c20140	0.74	-2.7
2,088,883	-		PGA1_c20140	0.75	-0.6
2,088,900	+		PGA1_c20140	0.77	-1.9
2,088,908	-		PGA1_c20140	0.78	+1.4
2,088,910	+		PGA1_c20140	0.78	-1.1
2,088,943	+		PGA1_c20140	0.82	-0.6
2,088,953	-		PGA1_c20140	0.83	-0.2
2,089,016	+				+1.0
2,089,076	+				-1.6
2,089,093	+				-1.0
2,089,101	-				+1.2
2,089,101	-				-0.6
2,089,123	-				+0.8
2,089,192	+		PGA1_c20150	0.26	+0.5
2,089,228	+		PGA1_c20150	0.35	+0.6
2,089,232	+		PGA1_c20150	0.36	+2.1
2,089,240	-		PGA1_c20150	0.38	+0.8
2,089,245	-		PGA1_c20150	0.40	-1.0
2,089,271	+		PGA1_c20150	0.46	-2.3
2,089,271	+		PGA1_c20150	0.46	-1.0
2,089,279	-		PGA1_c20150	0.48	+0.0
2,089,279	-		PGA1_c20150	0.48	+0.0
2,089,279	-		PGA1_c20150	0.48	-0.1
2,089,358	+		PGA1_c20150	0.69	-1.8
2,089,376	-		PGA1_c20150	0.74	+0.5
2,089,402	+		PGA1_c20150	0.80	+1.2
2,089,408	+		PGA1_c20150	0.82	+0.2
2,089,416	-		PGA1_c20150	0.84	-0.2
2,089,439	+				+1.0
2,089,478	-				-2.2
2,089,490	+				+0.7
2,089,490	+				+0.8
2,089,554	+				+1.0
2,089,636	-				-3.2
2,089,640	+				-0.6
2,089,690	+				-2.8
2,089,721	-				-1.8
2,089,728	-				-1.6
2,089,759	-				-2.0
2,089,762	+				-3.3
2,089,776	+				-3.2
2,089,779	-				-2.6
2,089,826	+				-2.0
2,089,954	-		PGA1_c20160	0.14	-1.0
2,090,029	-		PGA1_c20160	0.17	-3.6
2,090,043	+		PGA1_c20160	0.18	-1.3
2,090,051	+		PGA1_c20160	0.18	-2.9
2,090,123	-		PGA1_c20160	0.21	-1.8
2,090,128	+		PGA1_c20160	0.21	-3.5
2,090,136	-		PGA1_c20160	0.22	-2.6
2,090,149	+		PGA1_c20160	0.22	-2.0
2,090,157	-		PGA1_c20160	0.23	-2.2
2,090,158	+		PGA1_c20160	0.23	-1.6
2,090,166	-		PGA1_c20160	0.23	-2.2
2,090,183	-		PGA1_c20160	0.24	-1.6
2,090,193	-		PGA1_c20160	0.24	-2.5
2,090,249	+		PGA1_c20160	0.26	-2.3
2,090,249	+		PGA1_c20160	0.26	-2.2
2,090,257	-		PGA1_c20160	0.27	-2.0
2,090,257	-		PGA1_c20160	0.27	-1.3
2,090,278	-		PGA1_c20160	0.28	-2.5
2,090,293	-		PGA1_c20160	0.28	-1.0
2,090,400	+		PGA1_c20160	0.33	-3.4
2,090,427	-		PGA1_c20160	0.34	-2.5
2,090,429	-		PGA1_c20160	0.34	-2.5
2,090,461	+		PGA1_c20160	0.35	-2.9
2,090,508	-		PGA1_c20160	0.37	-3.4
2,090,532	-		PGA1_c20160	0.38	-1.0
2,090,543	+		PGA1_c20160	0.39	-2.0
2,090,551	-		PGA1_c20160	0.39	-1.6
2,090,595	-		PGA1_c20160	0.41	-1.6
2,090,637	+		PGA1_c20160	0.43	-2.2
2,090,674	+		PGA1_c20160	0.44	-3.0
2,090,696	-		PGA1_c20160	0.45	-2.3
2,090,696	-		PGA1_c20160	0.45	-1.3
2,090,696	-		PGA1_c20160	0.45	-1.3
2,090,705	-		PGA1_c20160	0.46	-3.0
2,090,706	+		PGA1_c20160	0.46	-3.0
2,090,719	-		PGA1_c20160	0.46	-1.1
2,090,878	+		PGA1_c20160	0.53	-3.3
2,090,916	+		PGA1_c20160	0.55	-3.5
2,090,924	-		PGA1_c20160	0.55	-0.5
2,090,924	-		PGA1_c20160	0.55	-3.5
2,090,924	-		PGA1_c20160	0.55	-2.0
2,090,968	+		PGA1_c20160	0.57	-2.7
2,091,001	-		PGA1_c20160	0.58	-2.3
2,091,003	-		PGA1_c20160	0.58	-1.8
2,091,038	-		PGA1_c20160	0.60	-1.6
2,091,038	-		PGA1_c20160	0.60	-1.2
2,091,080	-		PGA1_c20160	0.62	-3.4
2,091,131	-		PGA1_c20160	0.64	-1.0
2,091,138	+		PGA1_c20160	0.64	-2.7
2,091,199	+		PGA1_c20160	0.67	-1.0
2,091,199	+		PGA1_c20160	0.67	-1.8
2,091,207	-		PGA1_c20160	0.67	-3.2
2,091,209	+		PGA1_c20160	0.67	-0.6
2,091,209	+		PGA1_c20160	0.67	-3.1
2,091,209	+		PGA1_c20160	0.67	-1.3
2,091,217	-		PGA1_c20160	0.67	-2.5
2,091,217	-		PGA1_c20160	0.67	-2.3
2,091,217	-		PGA1_c20160	0.67	-3.7
2,091,276	-		PGA1_c20160	0.70	-0.4
2,091,364	+		PGA1_c20160	0.74	-1.6
2,091,449	+		PGA1_c20160	0.77	-2.9
2,091,520	-		PGA1_c20160	0.80	+0.7
2,091,553	+		PGA1_c20160	0.82	-3.4
2,091,574	+		PGA1_c20160	0.83	-1.8
2,091,579	+		PGA1_c20160	0.83	-2.9
2,091,624	-		PGA1_c20160	0.85	-2.7
2,091,656	+		PGA1_c20160	0.86	-3.2
2,091,694	-		PGA1_c20160	0.88	-1.8
2,091,790	-				-1.8
2,091,840	+				+0.2
2,091,872	+				-1.3
2,091,880	-				-3.2
2,091,880	-				-1.7
2,091,978	-				-2.4
2,092,032	+				-2.3
2,092,037	+				-1.0
2,092,037	+				-2.2
2,092,040	-				-3.0
2,092,040	-				-2.0
2,092,040	-				-3.4
2,092,040	-				-2.0
2,092,045	-				-2.2
2,092,045	-				-2.7
2,092,046	-				-0.6
2,092,077	-				-2.3
2,092,077	-				-1.8
2,092,125	+		PGA1_c20170	0.13	-1.0
2,092,175	-		PGA1_c20170	0.19	-1.3
2,092,234	-		PGA1_c20170	0.25	+0.5
2,092,248	+		PGA1_c20170	0.27	-1.0
2,092,266	-		PGA1_c20170	0.29	-3.1
2,092,266	-		PGA1_c20170	0.29	-2.4
2,092,282	+		PGA1_c20170	0.30	-3.8
2,092,322	-		PGA1_c20170	0.35	-2.0
2,092,452	+		PGA1_c20170	0.49	-0.9
2,092,452	+		PGA1_c20170	0.49	-1.8
2,092,488	+		PGA1_c20170	0.53	-2.7
2,092,541	-		PGA1_c20170	0.58	-2.0
2,092,632	-		PGA1_c20170	0.68	-1.9
2,092,650	+		PGA1_c20170	0.70	-3.2
2,092,656	-		PGA1_c20170	0.71	-3.2
2,092,670	+		PGA1_c20170	0.72	-1.6
2,092,693	+		PGA1_c20170	0.75	-1.5
2,092,704	-		PGA1_c20170	0.76	-3.2
2,092,731	+		PGA1_c20170	0.79	-1.7
2,092,739	-		PGA1_c20170	0.80	-1.8
2,092,754	-		PGA1_c20170	0.81	-4.3
2,092,802	+				+1.0
2,092,810	-		PGA1_c20170	0.87	-2.3
2,092,810	-		PGA1_c20170	0.87	-2.9
2,092,810	-		PGA1_c20170	0.87	-3.8
2,092,810	-		PGA1_c20170	0.87	-2.6
2,092,810	-		PGA1_c20170	0.87	-3.2
2,092,858	+				-0.6
2,092,858	+				-0.1
2,092,858	+				-1.5
2,092,858	+				-3.5
2,092,858	+				-3.9
2,092,858	+				-3.3
2,092,858	+				-3.8
2,092,858	+				-0.6
2,092,858	+				-0.6
2,092,858	+				-2.8
2,092,858	+				-2.3
2,092,858	+				-2.6
2,092,858	+				-2.2
2,092,858	+				-3.1
2,092,858	+				-4.0
2,092,858	+				-2.8
2,092,858	+				-2.9
2,092,858	+				-1.3
2,092,866	-				-1.0
2,092,866	-				-1.6
2,092,866	-				-2.8
2,092,866	-				-3.6
2,092,866	-				-3.0
2,092,866	-				-1.6
2,092,866	-				-1.8
2,092,866	-				-1.2
2,092,866	-				-2.5
2,092,866	-				-1.0
2,092,866	-				-1.5
2,092,866	-				-1.0
2,092,866	-				-2.7
2,092,866	-				-3.6
2,092,866	-				-3.3
2,092,866	-				-3.1
2,092,868	+				-1.8
2,092,868	+				-2.4
2,092,868	+				-2.6
2,092,868	+				-1.3
2,092,868	+				-3.1
2,092,868	+				-3.1
2,092,868	+				-1.1
2,092,868	+				-0.4
2,092,868	+				-2.0
2,092,868	+				-1.3
2,092,876	-				-0.6
2,092,876	-				-2.8
2,092,876	-				-2.6
2,092,876	-				-3.1
2,092,876	-				-2.8
2,092,876	-				-1.3
2,092,876	-				-1.9
2,092,881	-				-1.9
2,092,882	+				-3.0
2,092,882	+				-2.2
2,092,885	+				-1.6
2,092,890	-				-3.8
2,092,921	-				-3.1
2,092,951	+				+0.6
2,092,959	-				+0.0
2,092,959	-				-2.9
2,092,959	-				-3.5
2,092,959	-				+0.2
2,092,959	-				-3.4