Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2768 and Dsui_2769 are separated by 289 nucleotides Dsui_2769 and Dsui_2770 are separated by 7 nucleotides
Dsui_2768: Dsui_2768 - uncharacterized protein involved in outer membrane biogenesis, at 2,925,873 to 2,926,982
_2768
Dsui_2769: Dsui_2769 - large extracellular alpha-helical protein, at 2,927,272 to 2,932,953
_2769
Dsui_2770: Dsui_2770 - penicillin-binding protein 1C, at 2,932,961 to 2,935,231
_2770
Position (kb)
2927
2928
2929
2930
2931
2932
2933 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2926.311 kb on + strand, within Dsui_2768 at 2926.385 kb on + strand, within Dsui_2768 at 2926.393 kb on - strand, within Dsui_2768 at 2926.451 kb on - strand at 2926.496 kb on + strand at 2926.532 kb on + strand, within Dsui_2768 at 2926.532 kb on + strand at 2926.540 kb on - strand at 2926.655 kb on + strand, within Dsui_2768 at 2926.801 kb on + strand, within Dsui_2768 at 2926.902 kb on + strand at 2927.081 kb on - strand at 2927.363 kb on - strand at 2927.429 kb on - strand at 2927.519 kb on + strand at 2927.601 kb on - strand at 2927.674 kb on + strand at 2927.753 kb on + strand at 2927.872 kb on + strand at 2927.973 kb on + strand at 2928.118 kb on + strand, within Dsui_2769 at 2928.255 kb on + strand at 2928.659 kb on + strand, within Dsui_2769 at 2928.691 kb on + strand at 2928.763 kb on + strand at 2929.008 kb on + strand, within Dsui_2769 at 2929.095 kb on + strand, within Dsui_2769 at 2929.122 kb on + strand at 2929.140 kb on - strand at 2929.373 kb on + strand, within Dsui_2769 at 2929.376 kb on - strand, within Dsui_2769 at 2929.466 kb on - strand at 2929.558 kb on + strand, within Dsui_2769 at 2929.609 kb on + strand at 2929.632 kb on + strand, within Dsui_2769 at 2929.679 kb on + strand at 2929.703 kb on + strand, within Dsui_2769 at 2929.870 kb on + strand, within Dsui_2769 at 2929.870 kb on + strand at 2929.903 kb on + strand at 2929.946 kb on - strand at 2930.038 kb on + strand at 2930.193 kb on + strand at 2930.227 kb on - strand at 2930.278 kb on - strand at 2930.287 kb on + strand, within Dsui_2769 at 2930.361 kb on - strand at 2930.441 kb on + strand, within Dsui_2769 at 2930.444 kb on + strand at 2930.537 kb on + strand, within Dsui_2769 at 2930.576 kb on + strand at 2930.613 kb on + strand, within Dsui_2769 at 2930.618 kb on + strand at 2930.618 kb on + strand, within Dsui_2769 at 2930.626 kb on - strand at 2930.761 kb on - strand at 2930.836 kb on + strand, within Dsui_2769 at 2931.055 kb on + strand at 2931.348 kb on + strand at 2931.357 kb on - strand at 2931.555 kb on + strand at 2931.574 kb on + strand, within Dsui_2769 at 2931.664 kb on + strand at 2931.698 kb on + strand at 2931.867 kb on + strand, within Dsui_2769 at 2932.067 kb on - strand at 2932.102 kb on + strand at 2932.160 kb on - strand at 2932.160 kb on - strand at 2932.276 kb on + strand at 2932.402 kb on + strand at 2932.404 kb on - strand at 2932.470 kb on + strand at 2932.651 kb on - strand at 2932.656 kb on - strand at 2932.704 kb on + strand at 2932.748 kb on + strand at 2932.793 kb on + strand at 2932.943 kb on - strand at 2933.017 kb on + strand at 2933.068 kb on - strand at 2933.340 kb on + strand, within Dsui_2770 at 2933.703 kb on - strand at 2933.823 kb on + strand at 2933.853 kb on + strand at 2933.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S) remove 2,926,311 + Dsui_2768 0.39 -1.2 2,926,385 + Dsui_2768 0.46 -0.2 2,926,393 - Dsui_2768 0.47 -0.6 2,926,451 - -0.0 2,926,496 + -1.0 2,926,532 + Dsui_2768 0.59 +0.2 2,926,532 + -0.2 2,926,540 - +0.9 2,926,655 + Dsui_2768 0.70 -1.0 2,926,801 + Dsui_2768 0.84 +0.4 2,926,902 + -1.0 2,927,081 - +0.4 2,927,363 - +0.5 2,927,429 - -0.3 2,927,519 + -1.0 2,927,601 - +0.6 2,927,674 + +0.7 2,927,753 + +0.0 2,927,872 + +0.3 2,927,973 + -1.0 2,928,118 + Dsui_2769 0.15 -0.4 2,928,255 + +0.5 2,928,659 + Dsui_2769 0.24 -0.7 2,928,691 + -0.2 2,928,763 + +0.1 2,929,008 + Dsui_2769 0.31 -0.7 2,929,095 + Dsui_2769 0.32 +0.7 2,929,122 + +0.6 2,929,140 - -0.5 2,929,373 + Dsui_2769 0.37 -0.5 2,929,376 - Dsui_2769 0.37 -1.1 2,929,466 - -2.0 2,929,558 + Dsui_2769 0.40 -0.7 2,929,609 + +0.1 2,929,632 + Dsui_2769 0.42 -0.6 2,929,679 + +0.4 2,929,703 + Dsui_2769 0.43 +0.2 2,929,870 + Dsui_2769 0.46 -0.5 2,929,870 + -0.1 2,929,903 + -0.4 2,929,946 - -0.4 2,930,038 + +1.1 2,930,193 + +0.9 2,930,227 - -1.6 2,930,278 - -1.0 2,930,287 + Dsui_2769 0.53 +0.1 2,930,361 - -0.2 2,930,441 + Dsui_2769 0.56 +0.0 2,930,444 + -0.1 2,930,537 + Dsui_2769 0.57 -0.1 2,930,576 + +1.5 2,930,613 + Dsui_2769 0.59 -0.4 2,930,618 + +1.1 2,930,618 + Dsui_2769 0.59 -0.5 2,930,626 - -1.5 2,930,761 - +1.0 2,930,836 + Dsui_2769 0.63 -0.5 2,931,055 + +0.2 2,931,348 + +0.3 2,931,357 - +1.5 2,931,555 + +0.3 2,931,574 + Dsui_2769 0.76 -0.4 2,931,664 + +0.5 2,931,698 + +0.8 2,931,867 + Dsui_2769 0.81 +0.3 2,932,067 - +0.3 2,932,102 + +1.5 2,932,160 - +0.0 2,932,160 - +1.3 2,932,276 + -1.1 2,932,402 + +0.5 2,932,404 - +0.1 2,932,470 + -0.5 2,932,651 - -0.3 2,932,656 - -1.9 2,932,704 + +0.2 2,932,748 + -0.0 2,932,793 + -0.5 2,932,943 - +0.3 2,933,017 + +1.1 2,933,068 - -0.6 2,933,340 + Dsui_2770 0.17 -1.1 2,933,703 - +1.0 2,933,823 + +2.1 2,933,853 + -0.2 2,933,923 + -1.5
Or see this region's nucleotide sequence