Strain Fitness in Dechlorosoma suillum PS around Dsui_2769

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2768 and Dsui_2769 are separated by 289 nucleotidesDsui_2769 and Dsui_2770 are separated by 7 nucleotides Dsui_2768: Dsui_2768 - uncharacterized protein involved in outer membrane biogenesis, at 2,925,873 to 2,926,982 _2768 Dsui_2769: Dsui_2769 - large extracellular alpha-helical protein, at 2,927,272 to 2,932,953 _2769 Dsui_2770: Dsui_2770 - penicillin-binding protein 1C, at 2,932,961 to 2,935,231 _2770 Position (kb) 2927 2928 2929 2930 2931 2932 2933Strain fitness (log2 ratio) -2 -1 0 1 2at 2926.311 kb on + strand, within Dsui_2768at 2926.385 kb on + strand, within Dsui_2768at 2926.393 kb on - strand, within Dsui_2768at 2926.451 kb on - strandat 2926.496 kb on + strandat 2926.532 kb on + strand, within Dsui_2768at 2926.532 kb on + strandat 2926.540 kb on - strandat 2926.655 kb on + strand, within Dsui_2768at 2926.801 kb on + strand, within Dsui_2768at 2926.902 kb on + strandat 2927.081 kb on - strandat 2927.363 kb on - strandat 2927.429 kb on - strandat 2927.519 kb on + strandat 2927.601 kb on - strandat 2927.674 kb on + strandat 2927.753 kb on + strandat 2927.872 kb on + strandat 2927.973 kb on + strandat 2928.118 kb on + strand, within Dsui_2769at 2928.255 kb on + strandat 2928.659 kb on + strand, within Dsui_2769at 2928.691 kb on + strandat 2928.763 kb on + strandat 2929.008 kb on + strand, within Dsui_2769at 2929.095 kb on + strand, within Dsui_2769at 2929.122 kb on + strandat 2929.140 kb on - strandat 2929.373 kb on + strand, within Dsui_2769at 2929.376 kb on - strand, within Dsui_2769at 2929.466 kb on - strandat 2929.558 kb on + strand, within Dsui_2769at 2929.609 kb on + strandat 2929.632 kb on + strand, within Dsui_2769at 2929.679 kb on + strandat 2929.703 kb on + strand, within Dsui_2769at 2929.870 kb on + strand, within Dsui_2769at 2929.870 kb on + strandat 2929.903 kb on + strandat 2929.946 kb on - strandat 2930.038 kb on + strandat 2930.193 kb on + strandat 2930.227 kb on - strandat 2930.278 kb on - strandat 2930.287 kb on + strand, within Dsui_2769at 2930.361 kb on - strandat 2930.441 kb on + strand, within Dsui_2769at 2930.444 kb on + strandat 2930.537 kb on + strand, within Dsui_2769at 2930.576 kb on + strandat 2930.613 kb on + strand, within Dsui_2769at 2930.618 kb on + strandat 2930.618 kb on + strand, within Dsui_2769at 2930.626 kb on - strandat 2930.761 kb on - strandat 2930.836 kb on + strand, within Dsui_2769at 2931.055 kb on + strandat 2931.348 kb on + strandat 2931.357 kb on - strandat 2931.555 kb on + strandat 2931.574 kb on + strand, within Dsui_2769at 2931.664 kb on + strandat 2931.698 kb on + strandat 2931.867 kb on + strand, within Dsui_2769at 2932.067 kb on - strandat 2932.102 kb on + strandat 2932.160 kb on - strandat 2932.160 kb on - strandat 2932.276 kb on + strandat 2932.402 kb on + strandat 2932.404 kb on - strandat 2932.470 kb on + strandat 2932.651 kb on - strandat 2932.656 kb on - strandat 2932.704 kb on + strandat 2932.748 kb on + strandat 2932.793 kb on + strandat 2932.943 kb on - strandat 2933.017 kb on + strandat 2933.068 kb on - strandat 2933.340 kb on + strand, within Dsui_2770at 2933.703 kb on - strandat 2933.823 kb on + strandat 2933.853 kb on + strandat 2933.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
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2,926,311 + Dsui_2768 0.39 -1.2
2,926,385 + Dsui_2768 0.46 -0.2
2,926,393 - Dsui_2768 0.47 -0.6
2,926,451 - -0.0
2,926,496 + -1.0
2,926,532 + Dsui_2768 0.59 +0.2
2,926,532 + -0.2
2,926,540 - +0.9
2,926,655 + Dsui_2768 0.70 -1.0
2,926,801 + Dsui_2768 0.84 +0.4
2,926,902 + -1.0
2,927,081 - +0.4
2,927,363 - +0.5
2,927,429 - -0.3
2,927,519 + -1.0
2,927,601 - +0.6
2,927,674 + +0.7
2,927,753 + +0.0
2,927,872 + +0.3
2,927,973 + -1.0
2,928,118 + Dsui_2769 0.15 -0.4
2,928,255 + +0.5
2,928,659 + Dsui_2769 0.24 -0.7
2,928,691 + -0.2
2,928,763 + +0.1
2,929,008 + Dsui_2769 0.31 -0.7
2,929,095 + Dsui_2769 0.32 +0.7
2,929,122 + +0.6
2,929,140 - -0.5
2,929,373 + Dsui_2769 0.37 -0.5
2,929,376 - Dsui_2769 0.37 -1.1
2,929,466 - -2.0
2,929,558 + Dsui_2769 0.40 -0.7
2,929,609 + +0.1
2,929,632 + Dsui_2769 0.42 -0.6
2,929,679 + +0.4
2,929,703 + Dsui_2769 0.43 +0.2
2,929,870 + Dsui_2769 0.46 -0.5
2,929,870 + -0.1
2,929,903 + -0.4
2,929,946 - -0.4
2,930,038 + +1.1
2,930,193 + +0.9
2,930,227 - -1.6
2,930,278 - -1.0
2,930,287 + Dsui_2769 0.53 +0.1
2,930,361 - -0.2
2,930,441 + Dsui_2769 0.56 +0.0
2,930,444 + -0.1
2,930,537 + Dsui_2769 0.57 -0.1
2,930,576 + +1.5
2,930,613 + Dsui_2769 0.59 -0.4
2,930,618 + +1.1
2,930,618 + Dsui_2769 0.59 -0.5
2,930,626 - -1.5
2,930,761 - +1.0
2,930,836 + Dsui_2769 0.63 -0.5
2,931,055 + +0.2
2,931,348 + +0.3
2,931,357 - +1.5
2,931,555 + +0.3
2,931,574 + Dsui_2769 0.76 -0.4
2,931,664 + +0.5
2,931,698 + +0.8
2,931,867 + Dsui_2769 0.81 +0.3
2,932,067 - +0.3
2,932,102 + +1.5
2,932,160 - +0.0
2,932,160 - +1.3
2,932,276 + -1.1
2,932,402 + +0.5
2,932,404 - +0.1
2,932,470 + -0.5
2,932,651 - -0.3
2,932,656 - -1.9
2,932,704 + +0.2
2,932,748 + -0.0
2,932,793 + -0.5
2,932,943 - +0.3
2,933,017 + +1.1
2,933,068 - -0.6
2,933,340 + Dsui_2770 0.17 -1.1
2,933,703 - +1.0
2,933,823 + +2.1
2,933,853 + -0.2
2,933,923 + -1.5

Or see this region's nucleotide sequence