Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2582 and Dsui_2583 are separated by 390 nucleotides Dsui_2583 and Dsui_2584 are separated by 13 nucleotides
Dsui_2582: Dsui_2582 - hypothetical protein, at 2,735,541 to 2,736,326
_2582
Dsui_2583: Dsui_2583 - hypothetical protein, at 2,736,717 to 2,736,812
_2583
Dsui_2584: Dsui_2584 - hypothetical protein, at 2,736,826 to 2,736,966
_2584
Position (kb)
2735
2736
2737 Strain fitness (log2 ratio)
-2
-1
0
1 at 2734.608 kb on - strand at 2734.620 kb on - strand at 2734.620 kb on - strand at 2734.641 kb on + strand at 2734.642 kb on + strand at 2734.693 kb on - strand at 2734.804 kb on + strand at 2734.812 kb on - strand at 2734.812 kb on - strand at 2734.875 kb on - strand at 2734.877 kb on + strand at 2734.966 kb on + strand at 2735.048 kb on + strand at 2735.064 kb on + strand at 2735.114 kb on + strand at 2735.204 kb on + strand at 2735.216 kb on + strand at 2735.224 kb on - strand at 2735.225 kb on - strand at 2735.261 kb on - strand at 2735.263 kb on + strand at 2735.343 kb on - strand at 2735.361 kb on + strand at 2735.419 kb on - strand at 2735.462 kb on - strand at 2735.515 kb on - strand at 2735.549 kb on + strand at 2735.603 kb on + strand at 2735.644 kb on + strand, within Dsui_2582 at 2735.714 kb on - strand, within Dsui_2582 at 2735.730 kb on - strand, within Dsui_2582 at 2735.863 kb on + strand, within Dsui_2582 at 2735.871 kb on - strand, within Dsui_2582 at 2735.908 kb on + strand, within Dsui_2582 at 2735.916 kb on - strand, within Dsui_2582 at 2736.042 kb on + strand, within Dsui_2582 at 2736.108 kb on + strand, within Dsui_2582 at 2736.135 kb on - strand, within Dsui_2582 at 2736.206 kb on + strand, within Dsui_2582 at 2736.235 kb on - strand, within Dsui_2582 at 2736.259 kb on - strand at 2736.264 kb on + strand at 2736.285 kb on + strand at 2736.294 kb on - strand at 2736.294 kb on - strand at 2736.297 kb on + strand at 2736.356 kb on + strand at 2736.356 kb on + strand at 2736.358 kb on + strand at 2736.361 kb on + strand at 2736.364 kb on - strand at 2736.364 kb on - strand at 2736.364 kb on - strand at 2736.364 kb on - strand at 2736.369 kb on - strand at 2736.369 kb on - strand at 2736.376 kb on - strand at 2736.379 kb on + strand at 2736.387 kb on - strand at 2736.392 kb on - strand at 2736.433 kb on + strand at 2736.474 kb on + strand at 2736.594 kb on - strand at 2736.650 kb on - strand at 2736.666 kb on + strand at 2736.686 kb on + strand at 2736.736 kb on + strand, within Dsui_2583 at 2736.736 kb on + strand, within Dsui_2583 at 2736.773 kb on - strand, within Dsui_2583 at 2736.775 kb on + strand, within Dsui_2583 at 2736.783 kb on + strand, within Dsui_2583 at 2736.791 kb on - strand, within Dsui_2583 at 2736.884 kb on + strand, within Dsui_2584 at 2737.113 kb on - strand at 2737.167 kb on - strand at 2737.167 kb on - strand at 2737.244 kb on - strand at 2737.249 kb on - strand at 2737.249 kb on - strand at 2737.265 kb on + strand at 2737.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S) remove 2,734,608 - -0.3 2,734,620 - +0.0 2,734,620 - +0.4 2,734,641 + +0.1 2,734,642 + -0.7 2,734,693 - -1.7 2,734,804 + +0.4 2,734,812 - -0.0 2,734,812 - +0.7 2,734,875 - +0.5 2,734,877 + -0.4 2,734,966 + -0.1 2,735,048 + -2.0 2,735,064 + -0.4 2,735,114 + +0.5 2,735,204 + -0.1 2,735,216 + -0.2 2,735,224 - -0.0 2,735,225 - +0.0 2,735,261 - +1.2 2,735,263 + -0.2 2,735,343 - +0.2 2,735,361 + -0.0 2,735,419 - -1.7 2,735,462 - -0.1 2,735,515 - +0.0 2,735,549 + -1.0 2,735,603 + -0.2 2,735,644 + Dsui_2582 0.13 -0.1 2,735,714 - Dsui_2582 0.22 -1.2 2,735,730 - Dsui_2582 0.24 -0.5 2,735,863 + Dsui_2582 0.41 -0.0 2,735,871 - Dsui_2582 0.42 +0.3 2,735,908 + Dsui_2582 0.47 -2.4 2,735,916 - Dsui_2582 0.48 -0.9 2,736,042 + Dsui_2582 0.64 +0.1 2,736,108 + Dsui_2582 0.72 -0.2 2,736,135 - Dsui_2582 0.76 -0.2 2,736,206 + Dsui_2582 0.85 +0.0 2,736,235 - Dsui_2582 0.88 -0.4 2,736,259 - +0.6 2,736,264 + -0.0 2,736,285 + -1.4 2,736,294 - -0.2 2,736,294 - +1.0 2,736,297 + +0.4 2,736,356 + +0.6 2,736,356 + -0.1 2,736,358 + +0.5 2,736,361 + -0.0 2,736,364 - +0.2 2,736,364 - +1.5 2,736,364 - -0.5 2,736,364 - +0.3 2,736,369 - -1.2 2,736,369 - +0.4 2,736,376 - -1.4 2,736,379 + -0.9 2,736,387 - -0.9 2,736,392 - +0.5 2,736,433 + +0.0 2,736,474 + +0.8 2,736,594 - +0.4 2,736,650 - +1.0 2,736,666 + +0.2 2,736,686 + -1.7 2,736,736 + Dsui_2583 0.20 -0.2 2,736,736 + Dsui_2583 0.20 -0.7 2,736,773 - Dsui_2583 0.58 +0.4 2,736,775 + Dsui_2583 0.60 -0.6 2,736,783 + Dsui_2583 0.69 -2.0 2,736,791 - Dsui_2583 0.77 +1.1 2,736,884 + Dsui_2584 0.41 -1.2 2,737,113 - -0.4 2,737,167 - -0.1 2,737,167 - -0.4 2,737,244 - +0.9 2,737,249 - -0.2 2,737,249 - +0.2 2,737,265 + +0.5 2,737,273 - -0.4
Or see this region's nucleotide sequence