Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2385 and Dsui_2386 are separated by 111 nucleotides Dsui_2386 and Dsui_2387 overlap by 4 nucleotides Dsui_2387 and Dsui_2388 overlap by 14 nucleotides
Dsui_2385: Dsui_2385 - transcription-repair coupling factor Mfd, at 2,535,212 to 2,538,808
_2385
Dsui_2386: Dsui_2386 - pyruvate-formate lyase-activating enzyme, at 2,538,920 to 2,540,020
_2386
Dsui_2387: Dsui_2387 - hypothetical protein, at 2,540,017 to 2,540,622
_2387
Dsui_2388: Dsui_2388 - putative dioxygenase, at 2,540,609 to 2,541,415
_2388
Position (kb)
2538
2539
2540
2541 Strain fitness (log2 ratio)
-2
-1
0
1 at 2538.098 kb on - strand, within Dsui_2385 at 2538.103 kb on - strand, within Dsui_2385 at 2538.121 kb on + strand at 2538.128 kb on - strand, within Dsui_2385 at 2538.370 kb on - strand, within Dsui_2385 at 2538.556 kb on - strand at 2538.648 kb on + strand at 2539.039 kb on + strand at 2539.047 kb on - strand, within Dsui_2386 at 2539.047 kb on - strand, within Dsui_2386 at 2539.047 kb on - strand at 2539.048 kb on + strand at 2539.098 kb on - strand, within Dsui_2386 at 2539.320 kb on - strand at 2539.331 kb on - strand at 2539.403 kb on - strand at 2539.451 kb on - strand at 2539.451 kb on - strand at 2539.625 kb on - strand, within Dsui_2386 at 2539.632 kb on - strand, within Dsui_2386 at 2539.632 kb on - strand, within Dsui_2386 at 2539.770 kb on - strand, within Dsui_2386 at 2539.786 kb on + strand at 2540.388 kb on - strand, within Dsui_2387 at 2540.559 kb on - strand at 2540.610 kb on + strand at 2540.637 kb on - strand at 2540.855 kb on - strand, within Dsui_2388 at 2540.979 kb on - strand, within Dsui_2388
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S) remove 2,538,098 - Dsui_2385 0.80 +0.7 2,538,103 - Dsui_2385 0.80 -0.5 2,538,121 + -0.0 2,538,128 - Dsui_2385 0.81 -0.5 2,538,370 - Dsui_2385 0.88 -0.6 2,538,556 - +0.4 2,538,648 + -0.8 2,539,039 + -1.8 2,539,047 - Dsui_2386 0.12 -0.1 2,539,047 - Dsui_2386 0.12 -0.6 2,539,047 - +0.3 2,539,048 + +0.7 2,539,098 - Dsui_2386 0.16 -0.1 2,539,320 - +0.1 2,539,331 - +1.6 2,539,403 - +0.3 2,539,451 - -1.6 2,539,451 - -0.1 2,539,625 - Dsui_2386 0.64 -0.2 2,539,632 - Dsui_2386 0.65 +0.1 2,539,632 - Dsui_2386 0.65 -0.3 2,539,770 - Dsui_2386 0.77 -0.9 2,539,786 + +0.9 2,540,388 - Dsui_2387 0.61 -0.6 2,540,559 - +0.1 2,540,610 + +1.5 2,540,637 - -0.4 2,540,855 - Dsui_2388 0.30 +0.1 2,540,979 - Dsui_2388 0.46 -0.2
Or see this region's nucleotide sequence