Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1407 and Dsui_1408 are separated by 134 nucleotides Dsui_1408 and Dsui_1409 are separated by 24 nucleotides Dsui_1409 and Dsui_1410 are separated by 122 nucleotides Dsui_1410 and Dsui_1411 overlap by 4 nucleotides
Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002
_1407
Dsui_1408: Dsui_1408 - NifZ domain-containing protein, at 1,466,137 to 1,466,406
_1408
Dsui_1409: Dsui_1409 - cation diffusion facilitator family transporter, at 1,466,431 to 1,467,318
_1409
Dsui_1410: Dsui_1410 - ATP phosphoribosyltransferase, at 1,467,441 to 1,468,091
_1410
Dsui_1411: Dsui_1411 - histidinol dehydrogenase, at 1,468,088 to 1,469,395
_1411
Position (kb)
1466
1467
1468 Strain fitness (log2 ratio)
-2
-1
0
1 at 1466.127 kb on + strand at 1466.142 kb on - strand at 1466.365 kb on + strand, within Dsui_1408 at 1466.384 kb on - strand at 1466.429 kb on + strand at 1466.436 kb on - strand at 1466.492 kb on - strand at 1466.504 kb on + strand at 1466.512 kb on - strand at 1466.531 kb on + strand, within Dsui_1409 at 1466.586 kb on + strand at 1466.631 kb on + strand, within Dsui_1409 at 1466.700 kb on + strand at 1466.714 kb on + strand, within Dsui_1409 at 1466.811 kb on + strand at 1466.819 kb on - strand, within Dsui_1409 at 1466.985 kb on - strand, within Dsui_1409 at 1467.106 kb on - strand, within Dsui_1409 at 1467.134 kb on - strand, within Dsui_1409 at 1467.152 kb on + strand, within Dsui_1409 at 1467.160 kb on - strand, within Dsui_1409 at 1467.244 kb on + strand at 1467.322 kb on - strand at 1467.324 kb on + strand at 1467.324 kb on + strand at 1467.324 kb on + strand at 1467.332 kb on - strand at 1468.060 kb on + strand at 1468.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S) remove 1,466,127 + -0.6 1,466,142 - +0.3 1,466,365 + Dsui_1408 0.84 -0.2 1,466,384 - -0.3 1,466,429 + -0.2 1,466,436 - -0.4 1,466,492 - -0.0 1,466,504 + -0.1 1,466,512 - -0.5 1,466,531 + Dsui_1409 0.11 -0.0 1,466,586 + +0.3 1,466,631 + Dsui_1409 0.23 -2.1 1,466,700 + +1.1 1,466,714 + Dsui_1409 0.32 -0.7 1,466,811 + -0.6 1,466,819 - Dsui_1409 0.44 -0.3 1,466,985 - Dsui_1409 0.62 -1.1 1,467,106 - Dsui_1409 0.76 -0.0 1,467,134 - Dsui_1409 0.79 +0.1 1,467,152 + Dsui_1409 0.81 -1.0 1,467,160 - Dsui_1409 0.82 +0.2 1,467,244 + +0.2 1,467,322 - -0.8 1,467,324 + +0.9 1,467,324 + +1.7 1,467,324 + -0.1 1,467,332 - -0.3 1,468,060 + +0.7 1,468,085 + -0.1
Or see this region's nucleotide sequence