Strain Fitness in Dechlorosoma suillum PS around Dsui_0248

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0246 and Dsui_0248 are separated by 844 nucleotidesDsui_0248 and Dsui_0249 overlap by 4 nucleotidesDsui_0249 and Dsui_0250 are separated by 39 nucleotides Dsui_0246: Dsui_0246 - mraZ protein, at 246,217 to 246,666 _0246 Dsui_0248: Dsui_0248 - Protein of unknown function (DUF3025), at 247,511 to 248,326 _0248 Dsui_0249: Dsui_0249 - hypothetical protein, at 248,323 to 248,832 _0249 Dsui_0250: Dsui_0250 - dihydroorotase, homodimeric type, at 248,872 to 249,906 _0250 Position (kb) 247 248 249Strain fitness (log2 ratio) -1 0 1at 246.527 kb on - strand, within Dsui_0246at 246.532 kb on - strand, within Dsui_0246at 246.538 kb on - strand, within Dsui_0246at 246.625 kb on - strandat 246.690 kb on - strandat 246.728 kb on - strandat 246.753 kb on - strandat 246.984 kb on + strandat 247.026 kb on - strandat 247.072 kb on - strandat 247.518 kb on + strandat 247.518 kb on + strandat 247.521 kb on - strandat 247.771 kb on - strand, within Dsui_0248at 247.876 kb on - strand, within Dsui_0248at 247.914 kb on - strandat 247.932 kb on - strand, within Dsui_0248at 248.030 kb on + strand, within Dsui_0248at 248.035 kb on + strandat 248.051 kb on + strandat 248.189 kb on + strand, within Dsui_0248at 248.427 kb on + strand, within Dsui_0249at 248.434 kb on + strand, within Dsui_0249at 248.571 kb on + strandat 248.579 kb on - strand, within Dsui_0249

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
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246,527 - Dsui_0246 0.69 -0.2
246,532 - Dsui_0246 0.70 -0.1
246,538 - Dsui_0246 0.71 -0.1
246,625 - -0.2
246,690 - -0.4
246,728 - +0.8
246,753 - -0.2
246,984 + -1.0
247,026 - -0.1
247,072 - -0.3
247,518 + +0.0
247,518 + +0.3
247,521 - -0.1
247,771 - Dsui_0248 0.32 -0.2
247,876 - Dsui_0248 0.45 -0.5
247,914 - +0.2
247,932 - Dsui_0248 0.52 -0.1
248,030 + Dsui_0248 0.64 -0.8
248,035 + +0.3
248,051 + +0.4
248,189 + Dsui_0248 0.83 -0.4
248,427 + Dsui_0249 0.20 -0.4
248,434 + Dsui_0249 0.22 +0.0
248,571 + -0.7
248,579 - Dsui_0249 0.50 -0.5

Or see this region's nucleotide sequence