Strain Fitness in Shewanella amazonensis SB2B around Sama_3540

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
4,169,863	+				+2.6
4,169,894	+				+0.7
4,169,894	+				+0.1
4,169,895	-				-0.3
4,169,895	-				+0.7
4,169,905	+				-0.2
4,169,906	-				-0.1
4,169,935	+				-0.5
4,170,012	-				-1.7
4,170,012	-				-0.7
4,170,012	-				-1.1
4,170,052	+		Sama_3539	0.13	+0.8
4,170,052	+		Sama_3539	0.13	+0.4
4,170,052	+		Sama_3539	0.13	-0.1
4,170,053	-		Sama_3539	0.13	-0.6
4,170,053	-		Sama_3539	0.13	-1.5
4,170,102	-		Sama_3539	0.19	+0.1
4,170,102	-		Sama_3539	0.19	-0.0
4,170,148	+		Sama_3539	0.24	+0.7
4,170,148	+		Sama_3539	0.24	+0.0
4,170,148	+		Sama_3539	0.24	+0.2
4,170,149	-		Sama_3539	0.24	+0.3
4,170,156	-		Sama_3539	0.25	-0.4
4,170,181	+		Sama_3539	0.28	-0.8
4,170,181	+		Sama_3539	0.28	+3.5
4,170,182	-		Sama_3539	0.28	+2.1
4,170,278	-		Sama_3539	0.39	+0.8
4,170,283	-		Sama_3539	0.40	-0.0
4,170,283	-		Sama_3539	0.40	+1.1
4,170,283	-		Sama_3539	0.40	+0.2
4,170,283	-		Sama_3539	0.40	+0.9
4,170,283	-		Sama_3539	0.40	-0.4
4,170,283	-		Sama_3539	0.40	-0.4
4,170,283	-		Sama_3539	0.40	-0.6
4,170,392	+		Sama_3539	0.53	+0.6
4,170,392	+		Sama_3539	0.53	-1.6
4,170,392	+		Sama_3539	0.53	+0.2
4,170,393	-		Sama_3539	0.53	-1.4
4,170,405	+		Sama_3539	0.54	-0.7
4,170,406	-		Sama_3539	0.54	-0.7
4,170,406	-		Sama_3539	0.54	-1.9
4,170,417	+		Sama_3539	0.55	+0.8
4,170,417	+		Sama_3539	0.55	+1.0
4,170,417	+		Sama_3539	0.55	+1.8
4,170,418	-		Sama_3539	0.56	+0.7
4,170,418	-		Sama_3539	0.56	-1.0
4,170,432	+		Sama_3539	0.57	-0.2
4,170,432	+		Sama_3539	0.57	-1.4
4,170,432	+		Sama_3539	0.57	-0.7
4,170,433	-		Sama_3539	0.57	-1.4
4,170,482	+		Sama_3539	0.63	+0.4
4,170,482	+		Sama_3539	0.63	+0.7
4,170,482	+		Sama_3539	0.63	+1.0
4,170,482	+		Sama_3539	0.63	-2.1
4,170,482	+		Sama_3539	0.63	-2.1
4,170,483	-		Sama_3539	0.63	-0.5
4,170,483	-		Sama_3539	0.63	-0.4
4,170,483	-		Sama_3539	0.63	-1.4
4,170,509	+		Sama_3539	0.66	+0.2
4,170,509	+		Sama_3539	0.66	-1.4
4,170,509	+		Sama_3539	0.66	+2.2
4,170,510	-		Sama_3539	0.66	-0.9
4,170,510	-		Sama_3539	0.66	+0.5
4,170,510	-		Sama_3539	0.66	+2.2
4,170,510	-		Sama_3539	0.66	+0.4
4,170,510	-		Sama_3539	0.66	+0.4
4,170,510	-		Sama_3539	0.66	-1.2
4,170,525	+		Sama_3539	0.68	-2.0
4,170,552	-		Sama_3539	0.71	-1.4
4,170,580	+		Sama_3539	0.75	-0.5
4,170,581	-		Sama_3539	0.75	-0.3
4,170,581	-		Sama_3539	0.75	-1.6
4,170,625	+		Sama_3539	0.80	+0.3
4,170,626	-		Sama_3539	0.80	+0.8
4,170,699	+		Sama_3539	0.88	+0.8
4,170,700	-		Sama_3539	0.89	-0.7
4,170,700	-		Sama_3539	0.89	+0.9
4,170,753	-				+1.5
4,170,814	+				+0.1
4,170,815	-				-0.4
4,170,815	-				-0.2
4,170,835	+				-0.1
4,170,835	+				+0.4
4,170,836	-				+0.1
4,170,865	+				-1.2
4,170,865	+				-1.4
4,170,866	-				+1.3
4,170,866	-				-0.6
4,170,866	-				+1.5
4,170,888	+				-1.1
4,170,888	+				+0.5
4,170,933	-				+0.3
4,171,035	+				+1.2
4,171,036	-				+2.4
4,171,036	-				-0.6
4,171,224	+		Sama_3540	0.17	+1.0
4,171,224	+		Sama_3540	0.17	+0.5
4,171,224	+		Sama_3540	0.17	+0.8
4,171,224	+		Sama_3540	0.17	+1.5
4,171,224	+		Sama_3540	0.17	+0.3
4,171,224	+		Sama_3540	0.17	+0.3
4,171,224	+		Sama_3540	0.17	+0.1
4,171,224	+		Sama_3540	0.17	-0.9
4,171,225	-		Sama_3540	0.17	-2.2
4,171,225	-		Sama_3540	0.17	-0.7
4,171,225	-		Sama_3540	0.17	-1.1
4,171,227	-		Sama_3540	0.17	-0.6
4,171,334	+		Sama_3540	0.22	-0.8
4,171,334	+		Sama_3540	0.22	+0.7
4,171,334	+		Sama_3540	0.22	-0.6
4,171,334	+		Sama_3540	0.22	+0.2
4,171,335	-		Sama_3540	0.22	-1.1
4,171,335	-		Sama_3540	0.22	+0.1
4,171,347	+		Sama_3540	0.22	-0.4
4,171,347	+		Sama_3540	0.22	-1.2
4,171,347	+		Sama_3540	0.22	+0.7
4,171,348	-		Sama_3540	0.22	-1.3
4,171,357	+		Sama_3540	0.23	-0.2
4,171,357	+		Sama_3540	0.23	-1.2
4,171,358	-		Sama_3540	0.23	-0.5
4,171,387	+		Sama_3540	0.24	-0.2
4,171,387	+		Sama_3540	0.24	-2.7
4,171,388	-		Sama_3540	0.24	-0.1
4,171,410	+		Sama_3540	0.25	-1.1
4,171,410	+		Sama_3540	0.25	-1.2
4,171,410	+		Sama_3540	0.25	-1.0
4,171,411	-		Sama_3540	0.25	-0.6
4,171,411	-		Sama_3540	0.25	+0.1
4,171,411	-		Sama_3540	0.25	-0.5
4,171,411	-		Sama_3540	0.25	-1.5
4,171,411	-		Sama_3540	0.25	+1.6
4,171,411	-		Sama_3540	0.25	+0.6
4,171,415	+		Sama_3540	0.25	+0.0
4,171,416	-		Sama_3540	0.25	-1.2
4,171,452	-		Sama_3540	0.27	-0.1
4,171,452	-		Sama_3540	0.27	+1.1
4,171,475	+		Sama_3540	0.28	-0.7
4,171,475	+		Sama_3540	0.28	-0.8
4,171,476	-		Sama_3540	0.28	-1.3
4,171,476	-		Sama_3540	0.28	+0.1
4,171,480	+		Sama_3540	0.28	-1.4
4,171,481	-		Sama_3540	0.28	-0.6
4,171,610	+		Sama_3540	0.34	+0.1
4,171,610	+		Sama_3540	0.34	-0.8
4,171,611	-		Sama_3540	0.34	+1.2
4,171,611	-		Sama_3540	0.34	-0.4
4,171,611	-		Sama_3540	0.34	-2.2
4,171,643	+		Sama_3540	0.35	-0.3
4,171,643	+		Sama_3540	0.35	-2.4
4,171,644	-		Sama_3540	0.35	+1.1
4,171,644	-		Sama_3540	0.35	-0.4
4,171,644	-		Sama_3540	0.35	-1.5
4,171,644	-		Sama_3540	0.35	-1.6
4,171,671	-		Sama_3540	0.36	+1.6
4,171,671	-		Sama_3540	0.36	-0.7
4,171,677	+		Sama_3540	0.37	-0.9
4,171,678	-		Sama_3540	0.37	-2.2
4,171,695	+		Sama_3540	0.37	+0.4
4,171,695	+		Sama_3540	0.37	-0.9
4,171,696	-		Sama_3540	0.37	-0.4
4,171,696	-		Sama_3540	0.37	+0.3
4,171,808	+		Sama_3540	0.42	-2.5
4,171,809	-		Sama_3540	0.42	-0.2
4,171,809	-		Sama_3540	0.42	+1.6
4,171,818	+		Sama_3540	0.43	-0.1
4,171,818	+		Sama_3540	0.43	+1.7
4,171,819	-		Sama_3540	0.43	+0.4
4,171,819	-		Sama_3540	0.43	+0.7
4,171,819	-		Sama_3540	0.43	+0.3
4,171,821	-		Sama_3540	0.43	-0.4
4,171,824	-		Sama_3540	0.43	+0.9
4,171,904	+		Sama_3540	0.47	+1.3
4,171,965	+		Sama_3540	0.49	-1.2
4,171,965	+		Sama_3540	0.49	-2.3
4,171,965	+		Sama_3540	0.49	-0.4
4,171,965	+		Sama_3540	0.49	+1.2
4,171,965	+		Sama_3540	0.49	-0.4
4,171,966	-		Sama_3540	0.49	-1.2
4,171,966	-		Sama_3540	0.49	+0.7
4,171,966	-		Sama_3540	0.49	-0.6
4,171,966	-		Sama_3540	0.49	-0.3
4,171,966	-		Sama_3540	0.49	-0.9
4,171,966	-		Sama_3540	0.49	+0.4
4,171,966	-		Sama_3540	0.49	+1.2
4,172,003	+		Sama_3540	0.51	-1.2
4,172,054	+		Sama_3540	0.53	-0.2
4,172,054	+		Sama_3540	0.53	+0.8
4,172,055	-		Sama_3540	0.53	+0.2
4,172,055	-		Sama_3540	0.53	-0.8
4,172,098	+		Sama_3540	0.55	+1.2
4,172,098	+		Sama_3540	0.55	+1.8
4,172,098	+		Sama_3540	0.55	-0.4
4,172,099	-		Sama_3540	0.55	-0.3
4,172,099	-		Sama_3540	0.55	+0.1
4,172,099	-		Sama_3540	0.55	-1.0
4,172,201	+		Sama_3540	0.59	+0.4
4,172,558	-		Sama_3540	0.75	-1.7
4,172,558	-		Sama_3540	0.75	+0.1
4,172,558	-		Sama_3540	0.75	+3.5
4,172,669	-		Sama_3540	0.80	-1.4
4,172,733	+		Sama_3540	0.82	+0.2
4,172,733	+		Sama_3540	0.82	+0.9
4,172,733	+		Sama_3540	0.82	+0.7
4,172,733	+		Sama_3540	0.82	-0.3
4,172,733	+		Sama_3540	0.82	-1.4
4,172,733	+		Sama_3540	0.82	-0.7
4,172,734	-		Sama_3540	0.82	-0.4
4,172,734	-		Sama_3540	0.82	+0.2
4,172,734	-		Sama_3540	0.82	-0.8
4,172,734	-		Sama_3540	0.82	-0.9
4,172,734	-		Sama_3540	0.82	-0.7
4,172,734	-		Sama_3540	0.82	-0.6
4,172,734	-		Sama_3540	0.82	-0.9
4,172,756	+		Sama_3540	0.83	-0.8
4,172,756	+		Sama_3540	0.83	-0.7
4,172,756	+		Sama_3540	0.83	+0.2
4,172,757	-		Sama_3540	0.83	+0.1
4,172,773	+		Sama_3540	0.84	-0.8
4,172,773	+		Sama_3540	0.84	-0.7
4,172,773	+		Sama_3540	0.84	-0.3
4,172,774	-		Sama_3540	0.84	-0.6
4,172,774	-		Sama_3540	0.84	-0.8
4,172,795	+		Sama_3540	0.85	+0.9
4,172,795	+		Sama_3540	0.85	-0.9
4,172,795	+		Sama_3540	0.85	-1.6
4,172,795	+		Sama_3540	0.85	-0.5
4,172,795	+		Sama_3540	0.85	-0.9
4,172,795	+		Sama_3540	0.85	-0.6
4,172,795	+		Sama_3540	0.85	-0.6
4,172,795	+		Sama_3540	0.85	-0.5
4,172,796	-		Sama_3540	0.85	+0.7
4,172,796	-		Sama_3540	0.85	-0.2
4,172,796	-		Sama_3540	0.85	+0.3
4,172,796	-		Sama_3540	0.85	+0.1
4,172,796	-		Sama_3540	0.85	-0.2
4,172,840	-		Sama_3540	0.87	+0.4
4,172,933	-				-0.6
4,172,933	-				-0.8
4,172,966	+				-1.0
4,173,042	+				-0.1
4,173,043	-				+0.4
4,173,043	-				+0.7
4,173,043	-				-0.1
4,173,043	-				-2.2
4,173,045	+				-0.1
4,173,066	+				+1.2
4,173,066	+				-0.2
4,173,067	-				-0.7
4,173,067	-				-0.9
4,173,092	-				+1.0
4,173,092	-				-0.3
4,173,092	-				-0.1
4,173,092	-				+0.4
4,173,092	-				-2.6
4,173,209	+				+1.0
4,173,209	+				+1.6
4,173,231	+				-1.2
4,173,303	+				-0.2
4,173,303	+				+0.6
4,173,303	+				-1.0
4,173,303	+				-1.0
4,173,303	+				+0.9
4,173,303	+				+1.5
4,173,303	+				+0.4
4,173,303	+				-0.8
4,173,304	-				-1.3
4,173,304	-				+0.9
4,173,304	-				+0.2
4,173,304	-				-0.6
4,173,462	+		Sama_3541	0.25	-0.3
4,173,462	+		Sama_3541	0.25	+2.1
4,173,463	-		Sama_3541	0.25	-0.3
4,173,463	-		Sama_3541	0.25	+1.9
4,173,463	-		Sama_3541	0.25	-1.7
4,173,463	-		Sama_3541	0.25	+0.4
4,173,463	-		Sama_3541	0.25	+0.7
4,173,463	-		Sama_3541	0.25	-1.1
4,173,463	-		Sama_3541	0.25	-0.9
4,173,498	+		Sama_3541	0.29	-0.5
4,173,499	-		Sama_3541	0.29	-0.2
4,173,648	-		Sama_3541	0.46	-0.4
4,173,648	-		Sama_3541	0.46	-0.3
4,173,699	+		Sama_3541	0.52	+0.5
4,173,700	-		Sama_3541	0.52	+0.0
4,173,700	-		Sama_3541	0.52	-0.6
4,173,747	+		Sama_3541	0.57	+0.5
4,173,747	+		Sama_3541	0.57	+0.3
4,173,748	-		Sama_3541	0.57	-0.5
4,173,991	+		Sama_3541	0.84	-0.4
4,173,991	+		Sama_3541	0.84	+0.6
4,173,991	+		Sama_3541	0.84	-0.3
4,173,992	-		Sama_3541	0.85	-0.4
4,173,992	-		Sama_3541	0.85	-0.1
4,173,992	-		Sama_3541	0.85	+0.1
4,173,992	-		Sama_3541	0.85	-0.6