Strain Fitness in Shewanella amazonensis SB2B around Sama_3039

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
3,615,188	+		Sama_3037	0.39	-0.5
3,615,189	-		Sama_3037	0.39	+0.2
3,615,189	-		Sama_3037	0.39	+0.7
3,615,189	-		Sama_3037	0.39	-1.2
3,615,241	+		Sama_3037	0.46	+0.2
3,615,242	-		Sama_3037	0.46	-0.8
3,615,242	-		Sama_3037	0.46	-1.5
3,615,268	+		Sama_3037	0.50	+0.4
3,615,268	+		Sama_3037	0.50	+1.4
3,615,439	-		Sama_3037	0.73	-1.1
3,615,487	+		Sama_3037	0.80	+0.6
3,615,488	-		Sama_3037	0.80	+0.9
3,615,488	-		Sama_3037	0.80	+0.3
3,615,488	-		Sama_3037	0.80	-0.8
3,615,488	-		Sama_3037	0.80	-0.2
3,615,493	+		Sama_3037	0.81	-2.0
3,615,493	+		Sama_3037	0.81	+0.9
3,615,493	+		Sama_3037	0.81	+2.4
3,615,494	-		Sama_3037	0.81	-0.4
3,615,494	-		Sama_3037	0.81	+0.1
3,615,494	-		Sama_3037	0.81	+0.2
3,615,494	-		Sama_3037	0.81	-0.6
3,615,494	-		Sama_3037	0.81	-1.0
3,615,517	-		Sama_3037	0.84	-0.0
3,615,551	+		Sama_3037	0.89	-0.9
3,615,563	-				-0.9
3,615,634	+				-0.4
3,615,634	+				+0.3
3,615,634	+				-0.0
3,615,634	+				-2.4
3,615,635	-				+0.5
3,615,662	+				-1.7
3,615,662	+				-0.6
3,615,697	-		Sama_3038	0.11	-0.4
3,615,703	-		Sama_3038	0.13	-0.4
3,615,709	+		Sama_3038	0.14	+3.4
3,615,709	+		Sama_3038	0.14	+0.8
3,615,709	+		Sama_3038	0.14	-0.3
3,615,709	+		Sama_3038	0.14	+0.2
3,615,710	-		Sama_3038	0.15	-1.3
3,615,710	-		Sama_3038	0.15	-1.2
3,615,710	-		Sama_3038	0.15	-1.2
3,615,710	-		Sama_3038	0.15	+0.0
3,615,790	+		Sama_3038	0.39	-0.4
3,615,791	-		Sama_3038	0.39	-0.4
3,615,791	-		Sama_3038	0.39	-0.2
3,615,791	-		Sama_3038	0.39	-0.1
3,615,791	-		Sama_3038	0.39	+0.9
3,615,813	+		Sama_3038	0.46	+1.5
3,615,814	-		Sama_3038	0.46	-2.3
3,615,819	+		Sama_3038	0.47	-1.3
3,615,819	-		Sama_3038	0.47	-0.2
3,615,820	-		Sama_3038	0.48	+0.0
3,615,929	-		Sama_3038	0.80	+0.7
3,615,966	+				-1.2
3,615,966	+				+0.5
3,615,966	+				+2.1
3,615,966	+				+0.5
3,615,967	-				-0.6
3,615,967	-				-0.9
3,615,967	-				-0.5
3,615,967	-				+2.0
3,615,969	+				-2.8
3,615,969	+				-2.2
3,615,970	-				+0.1
3,615,971	-				-0.0
3,615,976	+				+1.2
3,615,977	-				+0.9
3,615,993	+				+1.2
3,615,999	+				+1.5
3,616,004	+				+2.6
3,616,004	+				+2.4
3,616,005	-				+0.9
3,616,005	-				-1.4
3,616,008	+				-0.4
3,616,008	+				+0.9
3,616,008	+				+2.1
3,616,022	-				+0.0
3,616,022	-				-0.4
3,616,025	+				+2.8
3,616,025	+				+2.3
3,616,025	+				+1.8
3,616,033	+				-0.4
3,616,034	-				-1.7
3,616,044	+				+0.5
3,616,044	+				-1.9
3,616,044	+				-1.5
3,616,044	+				-1.5
3,616,044	+				-0.7
3,616,044	+				+0.9
3,616,044	+				-0.4
3,616,044	+				-1.3
3,616,045	-				-1.6
3,616,045	-				-2.7
3,616,045	-				-1.1
3,616,045	-				-0.6
3,616,045	-				-1.0
3,616,045	-				-1.4
3,616,045	-				-0.1
3,616,045	-				+0.2
3,616,045	-				-0.2
3,616,045	-				+0.6
3,616,045	-				+0.3
3,616,045	-				-1.9
3,616,045	-				-0.4
3,616,062	-				+1.6
3,616,208	+		Sama_3039	0.17	-2.3
3,616,208	+		Sama_3039	0.17	+0.9
3,616,208	+		Sama_3039	0.17	-0.8
3,616,209	-		Sama_3039	0.17	-0.6
3,616,291	+		Sama_3039	0.26	-1.2
3,616,291	+		Sama_3039	0.26	-2.0
3,616,292	-		Sama_3039	0.26	-1.0
3,616,339	+		Sama_3039	0.31	-1.7
3,616,340	-		Sama_3039	0.31	-0.7
3,616,340	-		Sama_3039	0.31	-0.6
3,616,340	-		Sama_3039	0.31	-0.6
3,616,340	-		Sama_3039	0.31	-0.5
3,616,340	-		Sama_3039	0.31	-0.8
3,616,340	-		Sama_3039	0.31	-0.5
3,616,384	+		Sama_3039	0.36	-0.7
3,616,384	+		Sama_3039	0.36	-1.2
3,616,384	+		Sama_3039	0.36	+0.4
3,616,384	+		Sama_3039	0.36	-2.1
3,616,384	+		Sama_3039	0.36	-1.9
3,616,384	+		Sama_3039	0.36	-0.7
3,616,384	+		Sama_3039	0.36	+0.3
3,616,385	-		Sama_3039	0.36	-0.6
3,616,385	-		Sama_3039	0.36	-1.9
3,616,385	-		Sama_3039	0.36	+0.5
3,616,385	-		Sama_3039	0.36	-1.5
3,616,385	-		Sama_3039	0.36	-0.2
3,616,385	-		Sama_3039	0.36	-1.8
3,616,385	-		Sama_3039	0.36	+0.7
3,616,385	-		Sama_3039	0.36	-1.3
3,616,385	-		Sama_3039	0.36	-2.3
3,616,385	-		Sama_3039	0.36	-2.4
3,616,386	+		Sama_3039	0.36	+0.1
3,616,386	+		Sama_3039	0.36	-2.3
3,616,386	+		Sama_3039	0.36	-0.1
3,616,386	+		Sama_3039	0.36	-1.8
3,616,387	-		Sama_3039	0.37	-0.2
3,616,387	-		Sama_3039	0.37	-0.1
3,616,387	-		Sama_3039	0.37	-2.2
3,616,387	-		Sama_3039	0.37	-2.7
3,616,426	+		Sama_3039	0.41	-0.1
3,616,426	+		Sama_3039	0.41	-0.6
3,616,426	+		Sama_3039	0.41	-1.4
3,616,426	+		Sama_3039	0.41	-3.3
3,616,426	+		Sama_3039	0.41	-1.8
3,616,427	-		Sama_3039	0.41	+0.3
3,616,427	-		Sama_3039	0.41	-0.9
3,616,427	-		Sama_3039	0.41	-0.9
3,616,427	-		Sama_3039	0.41	-2.3
3,616,465	-		Sama_3039	0.45	-0.8
3,616,635	+		Sama_3039	0.63	-1.4
3,616,824	+		Sama_3039	0.84	-1.5
3,616,824	+		Sama_3039	0.84	+2.4
3,616,825	-		Sama_3039	0.84	-2.1
3,616,825	-		Sama_3039	0.84	-0.6
3,616,847	+		Sama_3039	0.86	-1.1
3,616,847	+		Sama_3039	0.86	-0.6
3,616,847	+		Sama_3039	0.86	-1.4
3,616,847	+		Sama_3039	0.86	-0.2
3,616,847	+		Sama_3039	0.86	-1.1
3,616,847	+		Sama_3039	0.86	-0.6
3,616,848	-		Sama_3039	0.86	-0.5
3,616,860	+		Sama_3039	0.88	-1.2
3,616,860	+		Sama_3039	0.88	-3.2
3,616,912	+				+1.4
3,616,969	+				-0.8
3,616,969	+				-3.0
3,616,970	-				-0.9
3,616,972	+				-2.6
3,616,973	-				-0.5
3,616,973	-				+0.1
3,617,011	+				+0.5
3,617,011	+				+0.1
3,617,011	+				-0.9
3,617,011	+				+1.1
3,617,011	+				+1.9
3,617,011	+				-0.3
3,617,012	-				-0.1
3,617,012	-				+0.5
3,617,012	-				-0.8
3,617,012	-				+0.5
3,617,012	-				+0.7
3,617,012	-				-0.1
3,617,012	-				+0.2
3,617,012	-				-0.8
3,617,012	-				-0.1
3,617,018	+				+0.1
3,617,018	+				+1.3
3,617,019	-				-1.0
3,617,019	-				+0.1
3,617,059	+				+0.4
3,617,059	+				+1.1
3,617,059	+				+0.5
3,617,074	+				+0.2
3,617,074	+				-1.7
3,617,074	+				-0.7
3,617,083	-				-1.0
3,617,083	-				-1.5
3,617,086	-				+0.9
3,617,100	+				-0.5
3,617,130	+				+1.1
3,617,152	+				-1.4
3,617,152	+				+1.9
3,617,153	-				+0.1
3,617,163	+				-0.0
3,617,164	-				-0.7
3,617,164	-				+1.2
3,617,172	+				+0.9
3,617,172	+				-0.5
3,617,172	+				+0.1
3,617,173	-				+1.6
3,617,173	-				-0.5
3,617,173	-				-0.3
3,617,173	-				-0.6
3,617,176	+				-0.0
3,617,177	-				+1.1
3,617,216	-				-0.6
3,617,255	+				+1.1
3,617,255	+				+0.1
3,617,255	+				-1.5
3,617,255	+				-0.5
3,617,255	+				-0.5
3,617,255	+				-0.5
3,617,255	+				+0.1
3,617,255	+				+0.4
3,617,255	+				+0.1
3,617,255	+				-1.1
3,617,255	+				+0.8
3,617,255	+				+1.3
3,617,255	+				-0.0
3,617,255	+				+0.2
3,617,255	+				-1.2
3,617,255	+				+1.0
3,617,255	+				+1.2
3,617,255	+				+1.1
3,617,255	+				-0.0
3,617,255	+				-0.9
3,617,255	+				+0.7
3,617,255	+				+1.2
3,617,255	+				+0.3
3,617,255	+				+0.4
3,617,255	+				+0.7
3,617,255	+				+0.6
3,617,255	+				-0.5
3,617,255	+				-0.9
3,617,255	+				-0.6
3,617,255	+				-0.4
3,617,255	+				+0.6
3,617,255	+				+0.8
3,617,255	+				+0.5
3,617,255	+				-0.7
3,617,255	+				-0.1
3,617,255	+				+0.7
3,617,256	-				-0.1
3,617,256	-				-0.5
3,617,256	-				-0.1
3,617,256	-				-0.1
3,617,256	-				-0.3
3,617,256	-				+1.0
3,617,256	-				-0.7
3,617,256	-				+3.5
3,617,256	-				+0.9
3,617,256	-				+2.7
3,617,256	-				-0.6
3,617,256	-				-1.0
3,617,256	-				-1.8
3,617,256	-				+2.1
3,617,270	+				-0.9
3,617,270	+				+0.8
3,617,270	+				-0.8
3,617,271	-				-0.5
3,617,284	+		Sama_3040	0.17	+0.5
3,617,317	+		Sama_3040	0.34	-1.0
3,617,317	+		Sama_3040	0.34	-1.6
3,617,320	+		Sama_3040	0.35	+0.3
3,617,320	+		Sama_3040	0.35	-0.0
3,617,320	+		Sama_3040	0.35	-0.6
3,617,320	+		Sama_3040	0.35	+0.1
3,617,368	+		Sama_3040	0.60	+2.2
3,617,368	+		Sama_3040	0.60	-0.7
3,617,368	+		Sama_3040	0.60	+2.8
3,617,369	-		Sama_3040	0.61	+0.2
3,617,426	+				+0.5
3,617,426	+				-0.4
3,617,426	+				+0.1
3,617,429	+				-0.1
3,617,444	+				-0.1
3,617,451	+				+1.6
3,617,452	-				+1.0
3,617,495	-				+0.8
3,617,501	+				-1.1
3,617,501	+				-1.9
3,617,501	+				+1.3
3,617,501	+				-2.2
3,617,502	-				-0.4
3,617,531	+				-0.4
3,617,532	-				+1.0
3,617,563	+				-0.1
3,617,563	+				+1.4
3,617,563	+				-0.3
3,617,563	+				+0.2
3,617,564	-				+0.1
3,617,564	-				+0.2
3,617,564	-				+1.2
3,617,564	-				+0.6
3,617,594	+				-1.0
3,617,595	-				-0.8