Strain Fitness in Shewanella amazonensis SB2B around Sama_2116

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
2,557,017	+				+1.3
2,557,017	+				+0.4
2,557,017	+				-0.7
2,557,018	-				+0.3
2,557,134	+		Sama_2115	0.19	-0.2
2,557,134	+		Sama_2115	0.19	-0.4
2,557,166	-		Sama_2115	0.23	-0.3
2,557,250	+		Sama_2115	0.33	-0.1
2,557,251	-		Sama_2115	0.33	+0.1
2,557,251	-		Sama_2115	0.33	+0.4
2,557,251	-		Sama_2115	0.33	+0.3
2,557,263	-		Sama_2115	0.34	+1.5
2,557,334	+		Sama_2115	0.42	-1.1
2,557,334	+		Sama_2115	0.42	-1.2
2,557,335	-		Sama_2115	0.43	-0.8
2,557,443	+		Sama_2115	0.55	-0.5
2,557,443	+		Sama_2115	0.55	-0.2
2,557,443	+		Sama_2115	0.55	-1.7
2,557,444	-		Sama_2115	0.55	-0.7
2,557,444	-		Sama_2115	0.55	+0.6
2,557,444	-		Sama_2115	0.55	-1.8
2,557,444	-		Sama_2115	0.55	-0.7
2,557,460	+		Sama_2115	0.57	+1.1
2,557,460	+		Sama_2115	0.57	-0.4
2,557,462	+		Sama_2115	0.58	-0.5
2,557,462	+		Sama_2115	0.58	+0.5
2,557,500	+		Sama_2115	0.62	+0.4
2,557,500	+		Sama_2115	0.62	+0.8
2,557,500	+		Sama_2115	0.62	-0.5
2,557,500	+		Sama_2115	0.62	-0.7
2,557,575	+		Sama_2115	0.71	-0.1
2,557,644	-		Sama_2115	0.79	+0.8
2,557,679	+		Sama_2115	0.83	-0.4
2,557,680	-		Sama_2115	0.83	+0.5
2,557,680	-		Sama_2115	0.83	+0.6
2,557,716	+		Sama_2115	0.88	+2.0
2,557,716	+		Sama_2115	0.88	-0.0
2,557,716	+		Sama_2115	0.88	+0.7
2,557,717	-		Sama_2115	0.88	+1.2
2,557,717	-		Sama_2115	0.88	-0.3
2,557,717	-		Sama_2115	0.88	-0.5
2,557,750	+				+1.4
2,557,750	+				-0.8
2,557,765	+				+0.2
2,557,765	+				+0.0
2,557,765	+				-0.3
2,557,848	-				-0.4
2,557,848	-				+0.5
2,557,951	+				-0.4
2,557,951	+				-0.1
2,557,958	+				+1.6
2,557,958	+				-0.1
2,557,959	-				-0.3
2,557,959	-				-2.0
2,557,959	-				-0.9
2,557,989	+				+0.3
2,557,990	-				-1.5
2,558,200	+				+0.9
2,558,200	+				-2.1
2,558,200	+				+2.5
2,558,200	+				+0.2
2,558,201	-				-0.1
2,558,201	-				-1.8
2,558,201	-				-0.4
2,558,204	+				+0.3
2,558,251	+				-0.7
2,558,251	+				+1.1
2,558,251	+				+0.2
2,558,252	-				+0.2
2,558,285	+		Sama_2116	0.10	-0.1
2,558,353	-		Sama_2116	0.13	-0.1
2,558,504	-		Sama_2116	0.19	+1.0
2,558,607	+		Sama_2116	0.23	+1.4
2,558,607	+		Sama_2116	0.23	+0.4
2,558,607	+		Sama_2116	0.23	+0.7
2,558,607	+		Sama_2116	0.23	-1.3
2,558,608	-		Sama_2116	0.23	-1.4
2,558,608	-		Sama_2116	0.23	-0.7
2,558,611	+		Sama_2116	0.23	-0.0
2,558,611	+		Sama_2116	0.23	+0.6
2,558,611	+		Sama_2116	0.23	-0.6
2,558,611	+		Sama_2116	0.23	-0.8
2,558,612	-		Sama_2116	0.23	-0.6
2,558,612	-		Sama_2116	0.23	-1.7
2,558,612	-		Sama_2116	0.23	-1.0
2,558,612	-		Sama_2116	0.23	-0.3
2,558,612	-		Sama_2116	0.23	+1.2
2,558,637	+		Sama_2116	0.24	-0.3
2,558,638	-		Sama_2116	0.24	-1.6
2,558,638	-		Sama_2116	0.24	-0.4
2,558,638	-		Sama_2116	0.24	-1.9
2,558,638	-		Sama_2116	0.24	+0.2
2,558,657	+		Sama_2116	0.24	+0.2
2,558,658	-		Sama_2116	0.24	-0.4
2,558,658	-		Sama_2116	0.24	-1.8
2,558,658	-		Sama_2116	0.24	-1.0
2,558,658	-		Sama_2116	0.24	+0.1
2,558,773	+		Sama_2116	0.29	-0.3
2,558,793	-		Sama_2116	0.30	+1.2
2,558,793	-		Sama_2116	0.30	+0.7
2,558,802	+		Sama_2116	0.30	-1.3
2,558,803	-		Sama_2116	0.30	+0.9
2,558,803	-		Sama_2116	0.30	+0.4
2,558,839	-		Sama_2116	0.31	-1.0
2,558,839	-		Sama_2116	0.31	-1.0
2,558,891	-		Sama_2116	0.33	-1.3
2,558,891	-		Sama_2116	0.33	+0.3
2,558,891	-		Sama_2116	0.33	-0.8
2,558,891	-		Sama_2116	0.33	+0.2
2,558,891	-		Sama_2116	0.33	+0.2
2,558,896	+		Sama_2116	0.33	+0.1
2,558,896	+		Sama_2116	0.33	+1.0
2,558,896	+		Sama_2116	0.33	+1.7
2,558,897	-		Sama_2116	0.33	-0.7
2,558,897	-		Sama_2116	0.33	-0.1
2,558,897	-		Sama_2116	0.33	-1.3
2,558,897	-		Sama_2116	0.33	+0.6
2,558,922	-		Sama_2116	0.34	+0.6
2,558,922	-		Sama_2116	0.34	-1.3
2,559,043	-		Sama_2116	0.39	+0.9
2,559,085	+		Sama_2116	0.41	+0.9
2,559,086	-		Sama_2116	0.41	+0.4
2,559,095	+		Sama_2116	0.41	-0.5
2,559,096	-		Sama_2116	0.41	-0.8
2,559,099	+		Sama_2116	0.41	-0.2
2,559,099	+		Sama_2116	0.41	-0.8
2,559,100	-		Sama_2116	0.41	-0.4
2,559,119	-		Sama_2116	0.42	-0.1
2,559,119	-		Sama_2116	0.42	-1.8
2,559,147	+		Sama_2116	0.43	-0.6
2,559,147	+		Sama_2116	0.43	+0.4
2,559,174	+		Sama_2116	0.44	-0.1
2,559,174	+		Sama_2116	0.44	-0.2
2,559,175	-		Sama_2116	0.44	-0.6
2,559,175	-		Sama_2116	0.44	-2.0
2,559,210	+		Sama_2116	0.45	+0.6
2,559,210	+		Sama_2116	0.45	+1.2
2,559,211	-		Sama_2116	0.45	-0.6
2,559,211	-		Sama_2116	0.45	-0.8
2,559,211	-		Sama_2116	0.45	-0.3
2,559,256	-		Sama_2116	0.47	+0.3
2,559,256	-		Sama_2116	0.47	-0.6
2,559,256	-		Sama_2116	0.47	+0.7
2,559,308	+		Sama_2116	0.49	-1.1
2,559,309	-		Sama_2116	0.49	+0.1
2,559,309	-		Sama_2116	0.49	+0.1
2,559,387	+		Sama_2116	0.52	-1.3
2,559,388	-		Sama_2116	0.52	-1.6
2,559,388	-		Sama_2116	0.52	+0.4
2,559,413	+		Sama_2116	0.53	+0.2
2,559,414	-		Sama_2116	0.53	-0.7
2,559,414	-		Sama_2116	0.53	+0.4
2,559,414	-		Sama_2116	0.53	-0.1
2,559,414	-		Sama_2116	0.53	-1.1
2,559,654	+		Sama_2116	0.62	+0.4
2,559,779	+		Sama_2116	0.67	-0.7
2,559,949	-		Sama_2116	0.73	-1.7
2,559,949	-		Sama_2116	0.73	-0.6
2,559,949	-		Sama_2116	0.73	-0.8
2,560,047	+		Sama_2116	0.77	-0.1
2,560,073	+		Sama_2116	0.78	-0.2
2,560,073	+		Sama_2116	0.78	-1.6
2,560,074	-		Sama_2116	0.78	-0.7
2,560,129	+		Sama_2116	0.80	-1.9
2,560,130	-		Sama_2116	0.80	-0.7
2,560,217	-		Sama_2116	0.83	-0.2
2,560,332	+		Sama_2116	0.88	+0.0
2,560,435	-				+0.2
2,560,451	+				+0.2
2,560,452	-				-0.3
2,560,452	-				+0.3
2,560,488	+				-1.1
2,560,610	+				-0.6
2,560,624	+				+0.5
2,560,692	-				+1.6
2,560,761	+				+0.4
2,560,767	+				-1.2
2,560,839	+		Sama_2117	0.11	-0.6
2,560,873	+		Sama_2117	0.14	+0.6
2,561,021	+		Sama_2117	0.26	-1.6
2,561,030	-		Sama_2117	0.27	+1.0
2,561,041	+		Sama_2117	0.28	-0.5
2,561,073	+		Sama_2117	0.31	-1.8
2,561,073	+		Sama_2117	0.31	-1.2
2,561,073	+		Sama_2117	0.31	-1.5
2,561,074	-		Sama_2117	0.31	+0.2
2,561,074	-		Sama_2117	0.31	+0.4
2,561,127	+		Sama_2117	0.35	+1.0
2,561,128	-		Sama_2117	0.35	+0.2
2,561,128	-		Sama_2117	0.35	-0.1
2,561,173	+		Sama_2117	0.39	-0.4
2,561,225	+		Sama_2117	0.44	+0.7
2,561,226	-		Sama_2117	0.44	-0.7
2,561,249	+		Sama_2117	0.46	+0.4
2,561,249	+		Sama_2117	0.46	-1.8
2,561,249	+		Sama_2117	0.46	+0.0
2,561,250	-		Sama_2117	0.46	+0.0
2,561,275	-		Sama_2117	0.48	-1.1
2,561,284	+		Sama_2117	0.49	-0.3
2,561,284	+		Sama_2117	0.49	-0.8
2,561,285	-		Sama_2117	0.49	+1.2
2,561,285	-		Sama_2117	0.49	-1.0
2,561,285	-		Sama_2117	0.49	-0.1
2,561,290	+		Sama_2117	0.49	-1.4
2,561,290	+		Sama_2117	0.49	-0.3
2,561,290	+		Sama_2117	0.49	+0.3
2,561,291	-		Sama_2117	0.49	+0.6
2,561,291	-		Sama_2117	0.49	+0.8
2,561,291	-		Sama_2117	0.49	-1.3
2,561,318	+		Sama_2117	0.51	+0.9
2,561,318	+		Sama_2117	0.51	+1.0
2,561,318	+		Sama_2117	0.51	-1.1
2,561,318	+		Sama_2117	0.51	+0.7
2,561,318	+		Sama_2117	0.51	-0.2
2,561,319	-		Sama_2117	0.51	-1.2
2,561,344	+		Sama_2117	0.54	+0.4
2,561,385	+		Sama_2117	0.57	-1.8
2,561,394	+		Sama_2117	0.58	-1.7
2,561,394	+		Sama_2117	0.58	-1.5
2,561,395	-		Sama_2117	0.58	-0.7
2,561,395	-		Sama_2117	0.58	-0.8
2,561,434	+		Sama_2117	0.61	+0.0
2,561,434	+		Sama_2117	0.61	-0.5
2,561,571	-		Sama_2117	0.73	-0.6