Strain Fitness in Shewanella amazonensis SB2B around Sama_1997

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
2,426,032	-		Sama_1995	0.83	-1.1
2,426,032	-		Sama_1995	0.83	+0.0
2,426,039	-		Sama_1995	0.84	+0.9
2,426,165	+				-0.8
2,426,165	+				-1.0
2,426,165	+				-1.0
2,426,165	+				-1.0
2,426,166	-				-0.2
2,426,166	-				+1.2
2,426,166	-				-0.6
2,426,166	-				+2.1
2,426,166	-				+0.6
2,426,196	+				+0.3
2,426,223	+				-0.3
2,426,251	-				-1.6
2,426,251	-				+0.9
2,426,251	-				-0.3
2,426,251	-				+0.5
2,426,253	+				+0.1
2,426,258	+				-0.4
2,426,259	-				-0.6
2,426,267	+				+1.2
2,426,318	+				+0.1
2,426,319	-				-1.2
2,426,319	-				-0.4
2,426,374	+				-1.5
2,426,374	+				-0.9
2,426,375	-				-1.0
2,426,375	-				+1.3
2,426,379	+				-2.1
2,426,380	-				-0.6
2,426,380	-				-1.8
2,426,381	+				-0.7
2,426,381	+				+0.5
2,426,381	+				+1.4
2,426,391	+				-0.3
2,426,391	+				-1.3
2,426,392	-				-0.6
2,426,458	+				-0.1
2,426,458	+				+1.2
2,426,459	-				-2.2
2,426,459	-				-1.5
2,426,511	-				+0.6
2,426,512	+				+0.7
2,426,512	+				-0.3
2,426,512	+				-0.5
2,426,513	-				-0.0
2,426,560	+				+0.4
2,426,561	-				-0.7
2,426,620	+				+0.7
2,426,620	+				-0.2
2,426,621	-				-1.8
2,426,637	+				-1.1
2,426,683	-		Sama_1996	0.16	-1.5
2,426,781	+		Sama_1996	0.42	-2.0
2,426,781	+		Sama_1996	0.42	+0.3
2,426,782	-		Sama_1996	0.43	-2.3
2,426,852	+		Sama_1996	0.62	+0.1
2,426,853	-		Sama_1996	0.62	+0.6
2,426,915	+		Sama_1996	0.78	-0.9
2,426,915	+		Sama_1996	0.78	-0.2
2,426,915	+		Sama_1996	0.78	-3.3
2,426,915	+		Sama_1996	0.78	-0.2
2,426,916	-		Sama_1996	0.79	-1.4
2,426,993	-				+0.5
2,427,076	-				+1.7
2,427,076	-				+1.5
2,427,107	-		Sama_1997	0.11	+1.4
2,427,115	+		Sama_1997	0.12	+0.6
2,427,115	+		Sama_1997	0.12	+5.8
2,427,116	-		Sama_1997	0.12	+1.7
2,427,116	-		Sama_1997	0.12	+1.4
2,427,116	-		Sama_1997	0.12	+3.8
2,427,116	-		Sama_1997	0.12	+0.6
2,427,116	-		Sama_1997	0.12	+1.7
2,427,116	-		Sama_1997	0.12	+5.3
2,427,156	+		Sama_1997	0.16	+1.6
2,427,157	-		Sama_1997	0.17	+0.9
2,427,175	+		Sama_1997	0.19	+3.7
2,427,241	-		Sama_1997	0.26	+2.3
2,427,308	+		Sama_1997	0.34	+1.4
2,427,309	-		Sama_1997	0.34	+0.4
2,427,333	+		Sama_1997	0.37	+1.3
2,427,334	-		Sama_1997	0.37	+4.8
2,427,334	-		Sama_1997	0.37	+0.5
2,427,334	-		Sama_1997	0.37	+1.5
2,427,334	-		Sama_1997	0.37	+0.9
2,427,337	+		Sama_1997	0.37	+0.2
2,427,337	+		Sama_1997	0.37	+0.9
2,427,338	-		Sama_1997	0.37	+1.8
2,427,338	-		Sama_1997	0.37	-0.2
2,427,338	-		Sama_1997	0.37	+1.1
2,427,338	-		Sama_1997	0.37	-0.1
2,427,587	+		Sama_1997	0.66	+1.9
2,427,603	+		Sama_1997	0.68	+2.3
2,427,604	-		Sama_1997	0.68	+0.8
2,427,604	-		Sama_1997	0.68	+2.6
2,427,604	-		Sama_1997	0.68	+1.0
2,427,634	-		Sama_1997	0.71	+2.2
2,427,722	+		Sama_1997	0.81	+1.3
2,427,722	+		Sama_1997	0.81	+1.5
2,427,808	+				-2.4
2,427,885	-				+0.9
2,427,937	-				+0.3
2,427,937	-				-0.0
2,427,937	-				-1.0
2,427,940	-				+0.5
2,427,947	-				+1.4
2,428,003	+				+0.3
2,428,003	+				+0.4
2,428,004	-				+0.4
2,428,004	-				+1.2
2,428,004	-				+0.7
2,428,033	+				+0.7
2,428,033	+				+2.9
2,428,033	+				+0.3
2,428,033	+				+1.2
2,428,033	+				+0.8
2,428,034	-				+0.7
2,428,034	-				+2.2
2,428,058	+				-0.2
2,428,059	-				+0.3
2,428,104	+		Sama_1998	0.19	+1.7
2,428,151	+		Sama_1998	0.30	+0.7
2,428,283	+		Sama_1998	0.60	+0.8
2,428,283	+		Sama_1998	0.60	-0.2
2,428,284	-		Sama_1998	0.60	+0.7
2,428,284	-		Sama_1998	0.60	+0.7
2,428,288	+		Sama_1998	0.61	-0.0
2,428,288	+		Sama_1998	0.61	+1.2
2,428,288	+		Sama_1998	0.61	+0.4
2,428,289	-		Sama_1998	0.61	+0.6
2,428,289	-		Sama_1998	0.61	+1.9
2,428,289	-		Sama_1998	0.61	+2.2
2,428,311	+		Sama_1998	0.66	+1.1
2,428,311	+		Sama_1998	0.66	+0.3
2,428,312	-		Sama_1998	0.67	+0.5
2,428,312	-		Sama_1998	0.67	+1.7
2,428,471	+				+0.5
2,428,494	+				-1.7
2,428,494	+				+0.4
2,428,494	+				-0.3
2,428,494	+				+0.4
2,428,497	-				-1.4
2,428,498	+				+0.6
2,428,499	-				-0.1
2,428,575	+		Sama_1999	0.10	-1.4
2,428,575	+		Sama_1999	0.10	-2.3
2,428,575	+		Sama_1999	0.10	-0.2
2,428,575	+		Sama_1999	0.10	+2.2
2,428,575	+		Sama_1999	0.10	+2.0
2,428,575	+		Sama_1999	0.10	-0.7
2,428,575	+		Sama_1999	0.10	-0.0
2,428,576	-		Sama_1999	0.11	+1.2
2,428,576	-		Sama_1999	0.11	+0.4
2,428,576	-		Sama_1999	0.11	+1.2
2,428,576	-		Sama_1999	0.11	+0.4
2,428,576	-		Sama_1999	0.11	+0.2
2,428,576	-		Sama_1999	0.11	+0.1
2,428,576	-		Sama_1999	0.11	+0.5
2,428,589	+		Sama_1999	0.12	+0.6
2,428,589	+		Sama_1999	0.12	+0.1
2,428,589	+		Sama_1999	0.12	-0.4
2,428,589	+		Sama_1999	0.12	+0.3
2,428,589	+		Sama_1999	0.12	+0.5
2,428,590	-		Sama_1999	0.12	-0.2
2,428,639	+		Sama_1999	0.17	-0.1
2,428,678	+		Sama_1999	0.22	-0.4
2,428,709	+		Sama_1999	0.25	+0.7
2,428,710	-		Sama_1999	0.25	+0.1
2,428,788	+		Sama_1999	0.33	-0.6
2,428,788	+		Sama_1999	0.33	+0.3
2,428,788	+		Sama_1999	0.33	+1.9
2,428,815	+		Sama_1999	0.36	+0.3
2,428,816	-		Sama_1999	0.36	-0.5
2,428,816	-		Sama_1999	0.36	+0.0
2,428,873	+		Sama_1999	0.42	-1.4
2,428,875	+		Sama_1999	0.43	-1.3
2,428,875	+		Sama_1999	0.43	+0.7
2,428,875	+		Sama_1999	0.43	+2.2
2,428,875	+		Sama_1999	0.43	+0.4
2,428,875	+		Sama_1999	0.43	+0.3
2,428,875	+		Sama_1999	0.43	-1.2
2,428,875	+		Sama_1999	0.43	-0.1
2,428,875	+		Sama_1999	0.43	-1.1
2,428,875	+		Sama_1999	0.43	+0.5
2,428,876	-		Sama_1999	0.43	-0.3
2,428,876	-		Sama_1999	0.43	-1.1
2,428,876	-		Sama_1999	0.43	-1.7
2,428,876	-		Sama_1999	0.43	-0.3
2,428,876	-		Sama_1999	0.43	-0.3
2,428,876	-		Sama_1999	0.43	-0.1