Strain Fitness in Shewanella amazonensis SB2B around Sama_1569

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
1,912,341	+				-0.9
1,912,341	+				-0.2
1,912,365	+		Sama_1568	0.11	+0.6
1,912,365	+		Sama_1568	0.11	-2.2
1,912,366	-		Sama_1568	0.11	-0.6
1,912,496	+		Sama_1568	0.23	-0.3
1,912,496	+		Sama_1568	0.23	+0.7
1,912,497	-		Sama_1568	0.23	+0.3
1,912,497	-		Sama_1568	0.23	-0.9
1,912,497	-		Sama_1568	0.23	-0.5
1,912,497	-		Sama_1568	0.23	-0.4
1,912,499	+		Sama_1568	0.24	+0.6
1,912,500	-		Sama_1568	0.24	-0.7
1,912,510	-		Sama_1568	0.25	-1.6
1,912,510	-		Sama_1568	0.25	-0.4
1,912,561	+		Sama_1568	0.29	-0.6
1,912,561	+		Sama_1568	0.29	-0.2
1,912,561	+		Sama_1568	0.29	-1.1
1,912,561	+		Sama_1568	0.29	-0.3
1,912,561	+		Sama_1568	0.29	-1.2
1,912,561	+		Sama_1568	0.29	-1.7
1,912,561	+		Sama_1568	0.29	-1.6
1,912,561	+		Sama_1568	0.29	+0.6
1,912,562	-		Sama_1568	0.30	-1.8
1,912,562	-		Sama_1568	0.30	+0.2
1,912,562	-		Sama_1568	0.30	-1.4
1,912,562	-		Sama_1568	0.30	-0.3
1,912,608	-		Sama_1568	0.34	-1.3
1,912,608	-		Sama_1568	0.34	-0.0
1,912,608	-		Sama_1568	0.34	-1.2
1,912,608	-		Sama_1568	0.34	-0.5
1,912,651	-		Sama_1568	0.38	-1.1
1,912,662	+		Sama_1568	0.39	-1.4
1,912,663	-		Sama_1568	0.39	-0.2
1,912,700	+		Sama_1568	0.43	-0.1
1,912,700	+		Sama_1568	0.43	-0.7
1,912,740	-		Sama_1568	0.47	+0.4
1,912,752	+		Sama_1568	0.48	+0.7
1,912,773	-		Sama_1568	0.50	-1.5
1,912,837	-		Sama_1568	0.56	+1.2
1,912,892	+		Sama_1568	0.61	-0.1
1,912,892	+		Sama_1568	0.61	-0.7
1,912,893	-		Sama_1568	0.61	-0.0
1,912,893	-		Sama_1568	0.61	+0.8
1,912,893	-		Sama_1568	0.61	-1.0
1,912,925	+		Sama_1568	0.65	-0.8
1,912,949	+		Sama_1568	0.67	-0.2
1,913,021	+		Sama_1568	0.74	-0.4
1,913,021	+		Sama_1568	0.74	-0.8
1,913,022	-		Sama_1568	0.74	+0.9
1,913,022	-		Sama_1568	0.74	+0.4
1,913,022	-		Sama_1568	0.74	-0.6
1,913,028	-		Sama_1568	0.74	-0.0
1,913,150	+		Sama_1568	0.86	+0.5
1,913,153	+		Sama_1568	0.87	-1.2
1,913,153	+		Sama_1568	0.87	+1.0
1,913,153	+		Sama_1568	0.87	+0.3
1,913,153	+		Sama_1568	0.87	-0.4
1,913,153	+		Sama_1568	0.87	+0.6
1,913,153	+		Sama_1568	0.87	-1.4
1,913,154	-		Sama_1568	0.87	-0.4
1,913,154	-		Sama_1568	0.87	-0.3
1,913,154	-		Sama_1568	0.87	-1.3
1,913,154	-		Sama_1568	0.87	-1.0
1,913,154	-		Sama_1568	0.87	-0.8
1,913,154	-		Sama_1568	0.87	-1.0
1,913,154	-		Sama_1568	0.87	-0.3
1,913,154	-		Sama_1568	0.87	+0.8
1,913,154	-		Sama_1568	0.87	+0.1
1,913,248	-				+1.4
1,913,338	+				-0.1
1,913,339	-				-0.1
1,913,422	-				-1.4
1,913,422	-				-1.1
1,913,422	-				+0.5
1,913,440	+				-1.9
1,913,440	+				-0.4
1,913,440	+				-1.4
1,913,441	-				-1.6
1,913,441	-				-0.2
1,913,457	+		Sama_1569	0.10	-0.5
1,913,457	+		Sama_1569	0.10	+0.0
1,913,566	+		Sama_1569	0.20	+1.1
1,913,567	-		Sama_1569	0.20	-0.2
1,913,567	-		Sama_1569	0.20	+0.4
1,913,597	+		Sama_1569	0.22	-0.2
1,913,597	+		Sama_1569	0.22	+0.2
1,913,598	-		Sama_1569	0.22	-1.7
1,913,598	-		Sama_1569	0.22	-0.4
1,913,602	+		Sama_1569	0.23	-1.2
1,913,602	+		Sama_1569	0.23	-0.5
1,913,602	+		Sama_1569	0.23	+0.7
1,913,602	+		Sama_1569	0.23	+0.5
1,913,605	+		Sama_1569	0.23	-1.3
1,913,605	+		Sama_1569	0.23	+1.3
1,913,605	+		Sama_1569	0.23	+0.0
1,913,606	-		Sama_1569	0.23	-0.1
1,913,606	-		Sama_1569	0.23	-1.5
1,913,717	+		Sama_1569	0.33	-0.5
1,913,821	+		Sama_1569	0.42	-1.3
1,913,821	+		Sama_1569	0.42	-2.2
1,913,821	+		Sama_1569	0.42	+0.0
1,913,821	+		Sama_1569	0.42	-0.3
1,913,822	-		Sama_1569	0.42	+0.5
1,913,822	-		Sama_1569	0.42	+0.4
1,913,826	-		Sama_1569	0.42	-1.2
1,913,837	+		Sama_1569	0.43	-1.6
1,913,880	+		Sama_1569	0.47	-1.0
1,913,880	+		Sama_1569	0.47	+1.6
1,913,929	-		Sama_1569	0.51	-0.0
1,913,939	-		Sama_1569	0.52	-0.2
1,913,939	-		Sama_1569	0.52	+1.6
1,913,957	+		Sama_1569	0.53	+0.7
1,913,958	-		Sama_1569	0.53	-2.1
1,914,000	+		Sama_1569	0.57	-0.4
1,914,000	+		Sama_1569	0.57	-0.3
1,914,000	+		Sama_1569	0.57	-0.6
1,914,001	-		Sama_1569	0.57	-1.2
1,914,001	-		Sama_1569	0.57	-1.5
1,914,001	-		Sama_1569	0.57	-0.8
1,914,010	+		Sama_1569	0.58	-0.9
1,914,010	+		Sama_1569	0.58	+0.0
1,914,089	-		Sama_1569	0.65	+0.6
1,914,120	+		Sama_1569	0.67	-1.3
1,914,120	+		Sama_1569	0.67	-1.6
1,914,191	-		Sama_1569	0.74	+0.8
1,914,191	-		Sama_1569	0.74	-0.8
1,914,275	+		Sama_1569	0.81	-0.4
1,914,275	+		Sama_1569	0.81	-0.4
1,914,276	-		Sama_1569	0.81	+0.4
1,914,276	-		Sama_1569	0.81	-0.4
1,914,276	-		Sama_1569	0.81	-0.2
1,914,277	+		Sama_1569	0.81	+1.3
1,914,277	+		Sama_1569	0.81	-2.8
1,914,278	-		Sama_1569	0.81	-1.9
1,914,327	-		Sama_1569	0.85	-0.2
1,914,356	+		Sama_1569	0.88	-0.3
1,914,356	+		Sama_1569	0.88	-0.3
1,914,357	-		Sama_1569	0.88	+0.5
1,914,357	-		Sama_1569	0.88	-0.6
1,914,367	+		Sama_1569	0.89	-0.2
1,914,367	+		Sama_1569	0.89	-0.1
1,914,368	-		Sama_1569	0.89	-1.8
1,914,368	-		Sama_1569	0.89	+0.4
1,914,371	+		Sama_1569	0.89	-0.7
1,914,371	+		Sama_1569	0.89	-1.3
1,914,379	+		Sama_1569	0.90	-1.0
1,914,379	+		Sama_1569	0.90	-1.0
1,914,379	+		Sama_1569	0.90	-0.4
1,914,379	+		Sama_1569	0.90	+0.4
1,914,379	+		Sama_1569	0.90	-0.7
1,914,380	-		Sama_1569	0.90	-0.3
1,914,380	-		Sama_1569	0.90	+0.0
1,914,513	-				+0.9
1,914,535	+				-0.4
1,914,554	-				+0.2
1,914,555	+				-0.7
1,914,555	+				+0.6
1,914,555	+				+0.3
1,914,555	+				-1.1
1,914,555	+				-0.5
1,914,576	+				+0.1
1,914,576	+				-1.7
1,914,576	+				+2.5
1,914,577	-				+0.2
1,914,653	-				+1.1
1,914,713	-				-2.1
1,914,713	-				+0.5
1,914,713	-				-0.7
1,914,717	+				+0.1
1,914,733	-				+1.5
1,914,733	-				+0.8
1,914,802	+		Sama_1570	0.12	-0.0
1,914,981	+		Sama_1570	0.32	+0.9
1,914,982	-		Sama_1570	0.32	+0.9
1,914,982	-		Sama_1570	0.32	+0.0
1,915,131	+		Sama_1570	0.48	+0.4
1,915,131	+		Sama_1570	0.48	-0.3
1,915,131	+		Sama_1570	0.48	+2.3
1,915,139	+		Sama_1570	0.49	-0.4
1,915,155	-		Sama_1570	0.51	+2.3
1,915,155	-		Sama_1570	0.51	-0.4
1,915,157	+		Sama_1570	0.51	-0.3
1,915,157	+		Sama_1570	0.51	-0.8
1,915,157	+		Sama_1570	0.51	-0.4
1,915,158	-		Sama_1570	0.51	+0.6
1,915,158	-		Sama_1570	0.51	+0.7
1,915,161	-		Sama_1570	0.52	+0.9
1,915,161	-		Sama_1570	0.52	+0.2
1,915,229	-		Sama_1570	0.59	+1.7
1,915,263	+		Sama_1570	0.63	-0.3
1,915,263	+		Sama_1570	0.63	-0.6
1,915,264	-		Sama_1570	0.63	+0.5
1,915,264	-		Sama_1570	0.63	-0.1
1,915,336	-		Sama_1570	0.71	-0.3
1,915,340	+		Sama_1570	0.71	+0.4
1,915,355	-		Sama_1570	0.73	-0.3
1,915,358	-		Sama_1570	0.73	-2.1
1,915,429	+		Sama_1570	0.81	-0.6
1,915,430	-		Sama_1570	0.81	-0.7
1,915,430	-		Sama_1570	0.81	+0.5
1,915,475	+		Sama_1570	0.86	+1.0
1,915,475	+		Sama_1570	0.86	-0.2