Strain Fitness in Shewanella amazonensis SB2B around Sama_1512

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
1,835,197	+		Sama_1511	0.33	-0.7
1,835,197	+		Sama_1511	0.33	-1.4
1,835,293	+		Sama_1511	0.41	+0.8
1,835,293	+		Sama_1511	0.41	-0.5
1,835,303	+		Sama_1511	0.41	-0.5
1,835,303	+		Sama_1511	0.41	+0.1
1,835,304	-		Sama_1511	0.42	+3.4
1,835,304	-		Sama_1511	0.42	+0.2
1,835,304	-		Sama_1511	0.42	+0.3
1,835,309	-		Sama_1511	0.42	+1.0
1,835,335	+		Sama_1511	0.44	+0.5
1,835,335	+		Sama_1511	0.44	-0.5
1,835,335	+		Sama_1511	0.44	-0.4
1,835,336	-		Sama_1511	0.44	-0.6
1,835,340	+		Sama_1511	0.44	+0.3
1,835,340	+		Sama_1511	0.44	-1.5
1,835,341	-		Sama_1511	0.45	-1.4
1,835,341	-		Sama_1511	0.45	+0.9
1,835,426	-		Sama_1511	0.51	+1.8
1,835,428	+		Sama_1511	0.51	-1.3
1,835,466	+		Sama_1511	0.55	-1.1
1,835,467	-		Sama_1511	0.55	-1.0
1,835,467	-		Sama_1511	0.55	+0.1
1,835,553	-		Sama_1511	0.61	+1.2
1,835,557	+		Sama_1511	0.62	-0.8
1,835,557	+		Sama_1511	0.62	-0.4
1,835,557	+		Sama_1511	0.62	-0.0
1,835,558	-		Sama_1511	0.62	+2.4
1,835,558	-		Sama_1511	0.62	-1.2
1,835,567	+		Sama_1511	0.63	+0.3
1,835,568	-		Sama_1511	0.63	-0.7
1,835,568	-		Sama_1511	0.63	-0.6
1,835,568	-		Sama_1511	0.63	-0.0
1,835,569	+		Sama_1511	0.63	+0.9
1,835,569	+		Sama_1511	0.63	-0.1
1,835,613	+		Sama_1511	0.66	-0.6
1,835,713	-		Sama_1511	0.74	+1.2
1,835,761	+		Sama_1511	0.78	-0.9
1,835,762	-		Sama_1511	0.78	-0.7
1,835,987	+				+0.7
1,835,987	+				+0.3
1,835,987	+				-0.3
1,836,011	-				-0.8
1,836,098	+				+1.3
1,836,099	-				+0.0
1,836,099	-				-0.5
1,836,120	+				+0.3
1,836,121	-				-0.7
1,836,131	+				+0.5
1,836,131	+				-0.2
1,836,132	-				-0.2
1,836,132	-				+0.9
1,836,228	+				-0.9
1,836,229	-				-1.9
1,836,237	+				+0.3
1,836,238	-				-1.5
1,836,262	+				-0.6
1,836,262	+				-0.7
1,836,263	-				-0.1
1,836,263	-				+0.2
1,836,263	-				-0.9
1,836,264	+				-1.4
1,836,264	+				-0.5
1,836,264	+				+0.6
1,836,264	+				-0.4
1,836,265	-				+0.1
1,836,265	-				-2.1
1,836,270	+				-0.6
1,836,270	+				-0.6
1,836,271	-				+0.9
1,836,271	-				+0.4
1,836,271	-				+1.2
1,836,325	-				-0.4
1,836,325	-				-1.0
1,836,354	+				+0.5
1,836,459	+		Sama_1512	0.14	-0.1
1,836,460	-		Sama_1512	0.14	-0.3
1,836,460	-		Sama_1512	0.14	-0.9
1,836,460	-		Sama_1512	0.14	+1.2
1,836,460	-		Sama_1512	0.14	+0.6
1,836,461	+		Sama_1512	0.14	-0.2
1,836,462	+		Sama_1512	0.14	+0.4
1,836,462	+		Sama_1512	0.14	+0.7
1,836,463	-		Sama_1512	0.14	+0.2
1,836,463	-		Sama_1512	0.14	-1.5
1,836,536	-		Sama_1512	0.17	-0.6
1,836,871	+		Sama_1512	0.31	+1.2
1,836,871	+		Sama_1512	0.31	+0.1
1,836,872	-		Sama_1512	0.31	-0.7
1,836,872	-		Sama_1512	0.31	-1.4
1,836,872	-		Sama_1512	0.31	+0.5
1,836,872	-		Sama_1512	0.31	-0.1
1,836,873	+		Sama_1512	0.31	+1.2
1,836,874	-		Sama_1512	0.31	-0.9
1,836,896	-		Sama_1512	0.32	-1.1
1,836,896	-		Sama_1512	0.32	+1.4
1,836,957	+		Sama_1512	0.35	-0.3
1,836,957	+		Sama_1512	0.35	+0.3
1,836,957	+		Sama_1512	0.35	-0.3
1,836,957	+		Sama_1512	0.35	+1.0
1,836,958	-		Sama_1512	0.35	+2.0
1,836,958	-		Sama_1512	0.35	-0.2
1,836,972	+		Sama_1512	0.35	-0.3
1,836,972	+		Sama_1512	0.35	-0.4
1,836,972	+		Sama_1512	0.35	-0.1
1,836,973	-		Sama_1512	0.35	+1.7
1,836,973	-		Sama_1512	0.35	-0.6
1,836,975	+		Sama_1512	0.36	+0.6
1,836,976	-		Sama_1512	0.36	+0.4
1,836,994	+		Sama_1512	0.36	+0.5
1,836,994	+		Sama_1512	0.36	-0.3
1,836,994	+		Sama_1512	0.36	-0.4
1,836,994	+		Sama_1512	0.36	-1.8
1,836,996	+		Sama_1512	0.36	+0.3
1,836,996	+		Sama_1512	0.36	-0.0
1,836,997	-		Sama_1512	0.36	-0.0
1,837,008	+		Sama_1512	0.37	-0.5
1,837,009	-		Sama_1512	0.37	+0.5
1,837,009	-		Sama_1512	0.37	-1.4
1,837,027	+		Sama_1512	0.38	+2.3
1,837,028	-		Sama_1512	0.38	-0.2
1,837,036	+		Sama_1512	0.38	-0.5
1,837,037	-		Sama_1512	0.38	-1.8
1,837,087	+		Sama_1512	0.40	-0.5
1,837,146	+		Sama_1512	0.43	-0.0
1,837,231	+		Sama_1512	0.46	+0.2
1,837,236	+		Sama_1512	0.47	-0.0
1,837,237	-		Sama_1512	0.47	+0.4
1,837,237	-		Sama_1512	0.47	-0.5
1,837,296	+		Sama_1512	0.49	+0.0
1,837,297	-		Sama_1512	0.49	-2.0
1,837,303	-		Sama_1512	0.49	-0.6
1,837,514	-		Sama_1512	0.58	+0.9
1,837,811	+		Sama_1512	0.71	+0.1
1,837,812	-		Sama_1512	0.71	+0.3
1,837,846	+		Sama_1512	0.72	-0.3
1,837,846	+		Sama_1512	0.72	+0.3
1,837,846	+		Sama_1512	0.72	+0.7
1,837,846	+		Sama_1512	0.72	+2.4
1,837,847	-		Sama_1512	0.72	+2.9
1,837,847	-		Sama_1512	0.72	+0.5
1,837,847	-		Sama_1512	0.72	-0.6
1,837,847	-		Sama_1512	0.72	-0.4
1,837,847	-		Sama_1512	0.72	-0.3
1,837,850	+		Sama_1512	0.72	-0.5
1,837,851	-		Sama_1512	0.73	-1.5
1,837,851	-		Sama_1512	0.73	-1.9
1,837,851	-		Sama_1512	0.73	-1.0
1,837,851	-		Sama_1512	0.73	+1.2
1,837,851	-		Sama_1512	0.73	-0.1
1,837,949	-		Sama_1512	0.77	+0.1
1,837,958	+		Sama_1512	0.77	+0.6
1,837,959	-		Sama_1512	0.77	+0.5
1,837,959	-		Sama_1512	0.77	+0.7
1,838,029	+		Sama_1512	0.80	+2.9
1,838,029	+		Sama_1512	0.80	+0.8
1,838,046	-		Sama_1512	0.81	+2.0
1,838,107	+		Sama_1512	0.83	-0.3
1,838,108	-		Sama_1512	0.83	+0.8
1,838,108	-		Sama_1512	0.83	+2.8
1,838,149	+		Sama_1512	0.85	-0.6
1,838,149	+		Sama_1512	0.85	+0.5
1,838,149	+		Sama_1512	0.85	-1.8
1,838,150	-		Sama_1512	0.85	-0.0
1,838,150	-		Sama_1512	0.85	+1.4
1,838,165	+		Sama_1512	0.86	-1.6
1,838,165	+		Sama_1512	0.86	+0.7
1,838,217	+		Sama_1512	0.88	-1.9
1,838,217	+		Sama_1512	0.88	-0.3
1,838,218	-		Sama_1512	0.88	+0.5
1,838,218	-		Sama_1512	0.88	-1.4
1,838,218	-		Sama_1512	0.88	-0.8
1,838,218	-		Sama_1512	0.88	+1.1
1,838,218	-		Sama_1512	0.88	+0.8
1,838,218	-		Sama_1512	0.88	-1.7
1,838,238	+		Sama_1512	0.89	-0.8
1,838,238	+		Sama_1512	0.89	-1.0
1,838,238	+		Sama_1512	0.89	+1.3
1,838,239	-		Sama_1512	0.89	-0.7
1,838,239	-		Sama_1512	0.89	-0.2
1,838,239	-		Sama_1512	0.89	-0.8
1,838,239	-		Sama_1512	0.89	-0.4
1,838,239	-		Sama_1512	0.89	-0.4
1,838,239	-		Sama_1512	0.89	-0.1
1,838,240	+		Sama_1512	0.89	-1.0
1,838,240	+		Sama_1512	0.89	+0.7
1,838,240	+		Sama_1512	0.89	-1.0
1,838,240	+		Sama_1512	0.89	+1.3
1,838,240	+		Sama_1512	0.89	+0.5
1,838,240	+		Sama_1512	0.89	+1.3
1,838,240	+		Sama_1512	0.89	-0.6
1,838,240	+		Sama_1512	0.89	-0.3
1,838,240	+		Sama_1512	0.89	-1.6
1,838,240	+		Sama_1512	0.89	+1.3
1,838,240	+		Sama_1512	0.89	-0.2
1,838,241	-		Sama_1512	0.89	+1.8
1,838,241	-		Sama_1512	0.89	-0.7
1,838,241	-		Sama_1512	0.89	-0.8
1,838,241	-		Sama_1512	0.89	-0.5
1,838,241	-		Sama_1512	0.89	+0.3
1,838,304	+				+1.3
1,838,305	-				-0.4
1,838,305	-				-0.9
1,838,384	+				-0.2
1,838,384	+				-0.7
1,838,384	+				-0.5
1,838,384	+				-0.2
1,838,384	+				-0.2
1,838,384	+				+0.8
1,838,384	+				-1.0
1,838,385	-				-0.4
1,838,385	-				-2.0
1,838,385	-				-0.7
1,838,385	-				+0.7
1,838,386	+				-0.7
1,838,387	-				-0.2
1,838,387	-				-2.3
1,838,387	-				+0.2
1,838,430	-				+0.8
1,838,482	+				+0.5
1,838,482	+				-0.9
1,838,537	+				-1.1
1,838,537	+				-0.3
1,838,537	+				-1.7
1,838,542	-				+0.5
1,838,542	-				-0.7
1,838,586	+				-0.8
1,838,631	+				-0.0
1,838,722	+		Sama_1513	0.12	-2.8
1,838,819	-		Sama_1513	0.24	+0.1
1,838,848	-		Sama_1513	0.27	-3.1
1,838,857	-		Sama_1513	0.29	-0.8
1,838,942	+		Sama_1513	0.39	-2.7
1,838,943	-		Sama_1513	0.39	-1.2
1,838,943	-		Sama_1513	0.39	-0.9
1,838,943	-		Sama_1513	0.39	-1.9
1,838,970	+		Sama_1513	0.43	-2.3
1,839,041	-		Sama_1513	0.52	-0.8
1,839,042	+		Sama_1513	0.52	-0.5
1,839,042	+		Sama_1513	0.52	-2.3
1,839,042	+		Sama_1513	0.52	-3.0
1,839,042	+		Sama_1513	0.52	-2.9
1,839,042	+		Sama_1513	0.52	-1.0
1,839,043	-		Sama_1513	0.52	-1.2
1,839,043	-		Sama_1513	0.52	-0.2
1,839,043	-		Sama_1513	0.52	-2.1
1,839,043	-		Sama_1513	0.52	-1.5
1,839,072	-		Sama_1513	0.56	-1.7
1,839,072	-		Sama_1513	0.56	-2.4
1,839,158	+		Sama_1513	0.66	-1.9
1,839,201	+		Sama_1513	0.72	-1.1
1,839,226	-		Sama_1513	0.75	-1.1
1,839,226	-		Sama_1513	0.75	-0.4
1,839,304	+		Sama_1513	0.85	-2.4
1,839,316	+		Sama_1513	0.86	-2.0
1,839,337	+		Sama_1513	0.89	-1.4
1,839,338	-		Sama_1513	0.89	-1.9
1,839,355	+				+0.1
1,839,360	+				-0.5
1,839,360	+				-1.5
1,839,360	+				+0.2
1,839,365	-				-0.1
1,839,401	-				-1.2
1,839,401	-				-2.5
1,839,425	-				-1.7
1,839,425	-				-2.4
1,839,425	-				-2.8