Strain Fitness in Shewanella amazonensis SB2B around Sama_1446

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
1,755,503	+		Sama_1445	0.53	-0.2
1,755,503	+		Sama_1445	0.53	-2.3
1,755,503	+		Sama_1445	0.53	-0.2
1,755,508	+		Sama_1445	0.54	+1.7
1,755,550	-		Sama_1445	0.57	+1.0
1,755,550	-		Sama_1445	0.57	+1.8
1,755,573	-		Sama_1445	0.59	+0.6
1,755,573	-		Sama_1445	0.59	-0.7
1,755,573	-		Sama_1445	0.59	-0.8
1,755,588	+		Sama_1445	0.61	-0.8
1,755,588	+		Sama_1445	0.61	-0.0
1,755,588	+		Sama_1445	0.61	-1.2
1,755,588	+		Sama_1445	0.61	-2.0
1,755,588	+		Sama_1445	0.61	+4.0
1,755,588	+		Sama_1445	0.61	+0.1
1,755,588	+		Sama_1445	0.61	+0.4
1,755,588	+		Sama_1445	0.61	-1.1
1,755,589	-		Sama_1445	0.61	-0.3
1,755,589	-		Sama_1445	0.61	-0.3
1,755,599	+		Sama_1445	0.62	-0.2
1,755,599	+		Sama_1445	0.62	-0.5
1,755,599	+		Sama_1445	0.62	+1.8
1,755,600	-		Sama_1445	0.62	-0.9
1,755,600	-		Sama_1445	0.62	-0.3
1,755,616	+		Sama_1445	0.63	+0.5
1,755,660	+		Sama_1445	0.67	-0.8
1,755,660	+		Sama_1445	0.67	-1.7
1,755,666	+		Sama_1445	0.67	+1.4
1,755,667	-		Sama_1445	0.68	-2.1
1,755,707	+		Sama_1445	0.71	+0.9
1,755,712	-		Sama_1445	0.71	-0.9
1,755,789	+		Sama_1445	0.78	-0.2
1,755,807	+		Sama_1445	0.80	-2.7
1,755,807	+		Sama_1445	0.80	-1.2
1,755,807	+		Sama_1445	0.80	-1.1
1,755,812	-		Sama_1445	0.80	-1.1
1,755,812	-		Sama_1445	0.80	+0.1
1,755,812	-		Sama_1445	0.80	-1.2
1,755,839	+		Sama_1445	0.82	-1.9
1,755,843	+		Sama_1445	0.83	-2.9
1,755,843	+		Sama_1445	0.83	+1.6
1,755,843	+		Sama_1445	0.83	-0.4
1,755,843	+		Sama_1445	0.83	-0.9
1,755,843	+		Sama_1445	0.83	+1.4
1,755,843	+		Sama_1445	0.83	-1.5
1,755,843	+		Sama_1445	0.83	+0.2
1,755,843	+		Sama_1445	0.83	-1.6
1,755,844	-		Sama_1445	0.83	+0.9
1,755,844	-		Sama_1445	0.83	-1.3
1,755,861	+		Sama_1445	0.84	-0.3
1,755,925	+		Sama_1445	0.90	-0.1
1,755,925	+		Sama_1445	0.90	+0.2
1,755,926	-		Sama_1445	0.90	-2.3
1,755,942	-				-2.1
1,755,950	+				+0.7
1,755,952	+				-1.0
1,755,952	+				+1.2
1,756,022	+				-0.2
1,756,023	-				+0.7
1,756,041	+				+0.1
1,756,103	+				+0.2
1,756,108	+				-0.4
1,756,109	-				+0.3
1,756,113	+				-1.5
1,756,114	-				-0.0
1,756,142	+				-0.2
1,756,142	+				-1.5
1,756,142	+				-0.8
1,756,178	+				-0.7
1,756,179	-				+0.5
1,756,212	+				-1.7
1,756,213	-				+0.4
1,756,215	+				-0.8
1,756,216	-				-1.7
1,756,292	+				+0.9
1,756,300	+				-1.2
1,756,300	+				+0.5
1,756,300	+				-2.3
1,756,300	+				-0.5
1,756,300	+				-0.5
1,756,301	-				+1.7
1,756,301	-				-0.1
1,756,304	+				+0.9
1,756,305	-				+1.0
1,756,305	-				-0.1
1,756,305	-				-0.0
1,756,311	+				-0.2
1,756,312	-				-0.3
1,756,312	-				+0.9
1,756,315	+				-0.5
1,756,315	+				+0.2
1,756,325	+				-0.3
1,756,334	+				+1.6
1,756,406	+				-0.2
1,756,417	+				+0.2
1,756,417	+				-2.0
1,756,417	+				+1.6
1,756,420	+				+0.9
1,756,420	+				+3.4
1,756,420	+				+0.7
1,756,435	+				+0.7
1,756,435	+				+0.2
1,756,529	+		Sama_1446	0.19	+1.6
1,756,582	+		Sama_1446	0.28	+0.2
1,756,599	+		Sama_1446	0.30	+0.9
1,756,600	-		Sama_1446	0.30	+0.6
1,756,616	+		Sama_1446	0.33	+0.2
1,756,629	+		Sama_1446	0.35	+1.7
1,756,629	+		Sama_1446	0.35	+0.2
1,756,640	+		Sama_1446	0.37	+0.5
1,756,640	+		Sama_1446	0.37	-0.7
1,756,714	+		Sama_1446	0.48	-0.3
1,756,798	+		Sama_1446	0.62	-0.1
1,756,798	+		Sama_1446	0.62	-0.5
1,756,798	+		Sama_1446	0.62	+0.2
1,756,953	+		Sama_1446	0.86	-1.7
1,757,180	-				+0.3
1,757,268	+				-0.2
1,757,268	+				-0.2
1,757,269	-				-2.7
1,757,275	+				+0.3
1,757,276	-				-1.6
1,757,328	-		Sama_1447	0.11	+0.0
1,757,532	-		Sama_1447	0.23	-0.1
1,757,532	-		Sama_1447	0.23	-1.0
1,757,686	+		Sama_1447	0.32	+0.8
1,757,686	+		Sama_1447	0.32	+0.3
1,757,687	-		Sama_1447	0.32	-1.7
1,757,721	+		Sama_1447	0.34	-0.5
1,757,722	-		Sama_1447	0.34	-0.5
1,757,751	+		Sama_1447	0.35	-0.8
1,757,751	+		Sama_1447	0.35	+0.5
1,757,752	-		Sama_1447	0.35	-1.0
1,757,752	-		Sama_1447	0.35	+0.5
1,757,756	+		Sama_1447	0.36	-0.9
1,757,756	+		Sama_1447	0.36	-1.5
1,757,756	+		Sama_1447	0.36	-1.0
1,757,756	+		Sama_1447	0.36	-0.9
1,757,756	+		Sama_1447	0.36	-0.3
1,757,756	+		Sama_1447	0.36	-0.4
1,757,757	-		Sama_1447	0.36	-0.3
1,757,757	-		Sama_1447	0.36	+0.5
1,757,757	-		Sama_1447	0.36	-1.2
1,757,757	-		Sama_1447	0.36	+1.8
1,757,790	+		Sama_1447	0.38	+0.9
1,757,791	-		Sama_1447	0.38	-1.3
1,757,856	+		Sama_1447	0.41	-1.6
1,757,857	-		Sama_1447	0.41	-0.3
1,757,857	-		Sama_1447	0.41	-0.5
1,757,857	-		Sama_1447	0.41	+0.7
1,757,940	+		Sama_1447	0.46	+0.2
1,757,940	+		Sama_1447	0.46	-1.7
1,757,940	+		Sama_1447	0.46	-2.4
1,757,940	+		Sama_1447	0.46	+0.3
1,757,940	+		Sama_1447	0.46	-0.4
1,757,941	-		Sama_1447	0.46	-0.3
1,757,941	-		Sama_1447	0.46	+0.8
1,757,941	-		Sama_1447	0.46	+2.2
1,757,943	+		Sama_1447	0.46	+0.5
1,757,943	+		Sama_1447	0.46	-0.4
1,757,943	+		Sama_1447	0.46	+0.5
1,757,943	+		Sama_1447	0.46	-0.4
1,757,944	-		Sama_1447	0.46	-0.1
1,757,944	-		Sama_1447	0.46	+0.5
1,757,944	-		Sama_1447	0.46	-0.9
1,757,944	-		Sama_1447	0.46	-0.3
1,757,961	+		Sama_1447	0.47	-0.9
1,757,962	-		Sama_1447	0.47	-1.0
1,757,962	-		Sama_1447	0.47	-0.0
1,757,982	+		Sama_1447	0.49	-0.3
1,757,982	+		Sama_1447	0.49	+1.9