Strain Fitness in Shewanella amazonensis SB2B around Sama_1406

Experiment: Glycine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (N)
1,706,905	+		Sama_1405	0.24	+0.0
1,706,905	+		Sama_1405	0.24	-0.0
1,706,948	+		Sama_1405	0.29	-0.7
1,707,056	-		Sama_1405	0.40	+0.9
1,707,102	-		Sama_1405	0.45	-1.3
1,707,102	-		Sama_1405	0.45	-0.1
1,707,112	+		Sama_1405	0.46	-0.0
1,707,112	+		Sama_1405	0.46	+0.1
1,707,113	-		Sama_1405	0.46	-1.7
1,707,113	-		Sama_1405	0.46	-0.2
1,707,113	-		Sama_1405	0.46	+0.2
1,707,113	-		Sama_1405	0.46	-1.6
1,707,113	-		Sama_1405	0.46	-0.3
1,707,185	+		Sama_1405	0.54	-0.2
1,707,185	+		Sama_1405	0.54	-0.1
1,707,186	-		Sama_1405	0.54	+2.0
1,707,186	-		Sama_1405	0.54	+0.9
1,707,357	-		Sama_1405	0.72	+0.1
1,707,389	+		Sama_1405	0.76	-0.7
1,707,415	+		Sama_1405	0.79	-0.5
1,707,416	-		Sama_1405	0.79	-0.6
1,707,453	+		Sama_1405	0.83	-1.1
1,707,453	+		Sama_1405	0.83	+0.4
1,707,453	+		Sama_1405	0.83	+0.5
1,707,454	-		Sama_1405	0.83	-1.2
1,707,459	+		Sama_1405	0.83	+0.1
1,707,459	+		Sama_1405	0.83	-0.1
1,707,460	-		Sama_1405	0.83	-0.3
1,707,483	+		Sama_1405	0.86	+0.6
1,707,483	+		Sama_1405	0.86	+0.6
1,707,483	+		Sama_1405	0.86	-0.5
1,707,483	+		Sama_1405	0.86	-0.5
1,707,483	+		Sama_1405	0.86	+1.6
1,707,483	+		Sama_1405	0.86	-0.5
1,707,483	+		Sama_1405	0.86	+1.3
1,707,483	+		Sama_1405	0.86	-0.8
1,707,484	-		Sama_1405	0.86	+0.3
1,707,484	-		Sama_1405	0.86	+0.6
1,707,612	+				-0.3
1,707,612	+				+0.1
1,707,612	+				+0.2
1,707,613	-				-1.0
1,707,613	-				-0.8
1,707,613	-				+0.5
1,707,616	+				-1.6
1,707,616	+				-0.1
1,707,616	+				+0.6
1,707,616	+				-1.2
1,707,628	+				+1.8
1,707,628	+				-1.1
1,707,629	-				-0.1
1,707,638	+				-1.4
1,707,639	-				-1.7
1,707,670	+				-0.8
1,707,683	+				+0.3
1,707,684	-				+0.6
1,707,706	+				-0.1
1,707,706	+				+1.4
1,707,706	+				+0.6
1,707,706	+				+1.7
1,707,706	+				-0.3
1,707,707	-				+1.3
1,707,707	-				-0.3
1,707,714	+				+1.0
1,707,714	+				+0.3
1,707,714	+				-0.4
1,707,714	+				+2.0
1,707,714	+				+0.6
1,707,715	-				-1.3
1,707,805	+				-0.2
1,707,806	-				+1.5
1,707,936	+				-0.8
1,707,936	+				-0.3
1,707,937	-				-0.4
1,707,937	-				+0.9
1,707,937	-				-1.2
1,708,078	+		Sama_1406	0.21	+0.1
1,708,078	+		Sama_1406	0.21	+0.5
1,708,198	+		Sama_1406	0.34	-1.7
1,708,198	+		Sama_1406	0.34	-2.2
1,708,222	+		Sama_1406	0.37	-0.4
1,708,222	+		Sama_1406	0.37	-0.0
1,708,235	+		Sama_1406	0.38	-0.6
1,708,235	+		Sama_1406	0.38	-0.5
1,708,235	+		Sama_1406	0.38	-0.6
1,708,236	-		Sama_1406	0.38	-0.9
1,708,236	-		Sama_1406	0.38	-0.4
1,708,236	-		Sama_1406	0.38	+0.3
1,708,237	+		Sama_1406	0.38	-0.3
1,708,238	-		Sama_1406	0.38	-1.5
1,708,292	-		Sama_1406	0.44	-2.0
1,708,328	+		Sama_1406	0.48	-0.7
1,708,329	-		Sama_1406	0.48	-1.1
1,708,411	+		Sama_1406	0.57	+1.5
1,708,411	+		Sama_1406	0.57	-0.4
1,708,411	+		Sama_1406	0.57	-1.3
1,708,411	+		Sama_1406	0.57	-0.2
1,708,411	+		Sama_1406	0.57	-0.8
1,708,411	+		Sama_1406	0.57	+1.2
1,708,412	-		Sama_1406	0.57	-0.5
1,708,412	-		Sama_1406	0.57	-0.4
1,708,412	-		Sama_1406	0.57	-0.1
1,708,412	-		Sama_1406	0.57	-0.7
1,708,412	-		Sama_1406	0.57	-0.7
1,708,412	-		Sama_1406	0.57	+0.5
1,708,412	-		Sama_1406	0.57	-0.1
1,708,412	-		Sama_1406	0.57	-0.8
1,708,413	+		Sama_1406	0.57	-1.5
1,708,413	+		Sama_1406	0.57	+2.5
1,708,413	+		Sama_1406	0.57	-2.4
1,708,413	+		Sama_1406	0.57	-0.4
1,708,413	+		Sama_1406	0.57	-0.2
1,708,413	+		Sama_1406	0.57	-0.9
1,708,414	-		Sama_1406	0.57	-0.2
1,708,414	-		Sama_1406	0.57	+0.4
1,708,430	+		Sama_1406	0.59	-1.2
1,708,576	+		Sama_1406	0.74	-1.4
1,708,576	+		Sama_1406	0.74	-0.4
1,708,576	+		Sama_1406	0.74	-0.3
1,708,576	+		Sama_1406	0.74	+0.6
1,708,576	+		Sama_1406	0.74	+0.7
1,708,595	+		Sama_1406	0.76	-0.9
1,708,595	+		Sama_1406	0.76	+0.6
1,708,596	-		Sama_1406	0.76	-0.9
1,708,596	-		Sama_1406	0.76	-1.2
1,708,597	+		Sama_1406	0.77	+0.8
1,708,598	-		Sama_1406	0.77	+0.6
1,708,668	+		Sama_1406	0.84	+0.2
1,708,669	-		Sama_1406	0.84	-2.1
1,708,669	-		Sama_1406	0.84	-1.3
1,708,770	+				-0.2
1,708,771	-				-0.9
1,708,771	-				-0.7
1,708,771	-				+1.2
1,708,771	-				-2.3
1,708,781	+				+0.4
1,708,781	+				+1.4
1,708,814	+				+0.9
1,708,815	-				-0.3
1,708,815	-				-0.9
1,708,988	-		Sama_1407	0.33	+1.2
1,708,991	-		Sama_1407	0.34	+1.2
1,709,019	-		Sama_1407	0.39	+0.2
1,709,061	+		Sama_1407	0.48	+0.4
1,709,062	-		Sama_1407	0.48	-0.5
1,709,184	-		Sama_1407	0.72	+0.5
1,709,184	-		Sama_1407	0.72	-0.6
1,709,313	+				-0.2
1,709,314	-				+2.6
1,709,348	+				-0.5
1,709,348	+				-0.7
1,709,355	+				-0.5
1,709,356	-				-0.6
1,709,395	+				+1.2
1,709,395	+				+0.3
1,709,395	+				-1.5
1,709,395	+				-1.0
1,709,395	+				+0.8
1,709,395	+				-0.8
1,709,395	+				+0.5
1,709,396	-				-0.8
1,709,396	-				-0.1
1,709,396	-				-0.0
1,709,396	-				-1.3
1,709,418	-				-0.4
1,709,429	-				-1.2
1,709,430	+				-0.2
1,709,430	+				-2.2
1,709,467	+				-1.1
1,709,467	+				+0.3
1,709,474	+				+2.4
1,709,579	+				-0.3