Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4147

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4146 and Dshi_4147 are separated by 188 nucleotidesDshi_4147 and Dshi_4148 overlap by 8 nucleotides Dshi_4146: Dshi_4146 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq), at 78,217 to 79,641 _4146 Dshi_4147: Dshi_4147 - glycosyl transferase family 2 (RefSeq), at 79,830 to 80,822 _4147 Dshi_4148: Dshi_4148 - ABC-2 type transporter (RefSeq), at 80,815 to 81,660 _4148 Position (kb) 79 80 81Strain fitness (log2 ratio) -1 0 1 2at 78.907 kb on - strand, within Dshi_4146at 79.241 kb on + strand, within Dshi_4146at 79.502 kb on + strandat 79.547 kb on + strandat 79.623 kb on + strandat 79.659 kb on + strandat 79.673 kb on + strandat 79.782 kb on + strandat 79.782 kb on + strandat 79.782 kb on + strandat 79.816 kb on - strandat 79.870 kb on - strandat 79.911 kb on - strandat 80.070 kb on + strand, within Dshi_4147at 80.108 kb on - strand, within Dshi_4147at 80.216 kb on - strand, within Dshi_4147at 80.297 kb on - strand, within Dshi_4147at 80.676 kb on - strand, within Dshi_4147at 80.780 kb on + strandat 80.798 kb on + strandat 80.908 kb on + strand, within Dshi_4148at 80.916 kb on - strand, within Dshi_4148at 80.916 kb on - strand, within Dshi_4148at 80.969 kb on - strand, within Dshi_4148at 81.116 kb on - strand, within Dshi_4148at 81.174 kb on + strand, within Dshi_4148at 81.182 kb on - strand, within Dshi_4148at 81.190 kb on - strand, within Dshi_4148at 81.243 kb on + strand, within Dshi_4148at 81.322 kb on + strand, within Dshi_4148at 81.477 kb on + strand, within Dshi_4148at 81.623 kb on - strandat 81.641 kb on + strandat 81.641 kb on + strandat 81.709 kb on - strandat 81.740 kb on - strandat 81.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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78,907 - Dshi_4146 0.48 +0.4
79,241 + Dshi_4146 0.72 -0.4
79,502 + -0.3
79,547 + +0.2
79,623 + -0.7
79,659 + -1.0
79,673 + -0.1
79,782 + +0.0
79,782 + -0.5
79,782 + -0.3
79,816 - -0.0
79,870 - +0.6
79,911 - +0.5
80,070 + Dshi_4147 0.24 +1.8
80,108 - Dshi_4147 0.28 +1.6
80,216 - Dshi_4147 0.39 +1.1
80,297 - Dshi_4147 0.47 +1.8
80,676 - Dshi_4147 0.85 +0.9
80,780 + -0.3
80,798 + +0.9
80,908 + Dshi_4148 0.11 +1.0
80,916 - Dshi_4148 0.12 +1.8
80,916 - Dshi_4148 0.12 +1.3
80,969 - Dshi_4148 0.18 +0.8
81,116 - Dshi_4148 0.36 +1.6
81,174 + Dshi_4148 0.42 +1.5
81,182 - Dshi_4148 0.43 +1.3
81,190 - Dshi_4148 0.44 +1.1
81,243 + Dshi_4148 0.51 +0.9
81,322 + Dshi_4148 0.60 +0.5
81,477 + Dshi_4148 0.78 +1.6
81,623 - +1.4
81,641 + -1.5
81,641 + +0.7
81,709 - +1.0
81,740 - +1.5
81,819 - +0.6

Or see this region's nucleotide sequence