Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3737

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3736 and Dshi_3737 overlap by 4 nucleotidesDshi_3737 and Dshi_3738 are separated by 311 nucleotides Dshi_3736: Dshi_3736 - Integrase catalytic region (RefSeq), at 142,349 to 143,254 _3736 Dshi_3737: Dshi_3737 - transposase IS3/IS911 family protein (RefSeq), at 143,251 to 143,583 _3737 Dshi_3738: Dshi_3738 - transposase IS116/IS110/IS902 family protein (RefSeq), at 143,895 to 145,256 _3738 Position (kb) 143 144Strain fitness (log2 ratio) -2 -1 0 1at 142.252 kb on + strandat 142.252 kb on + strandat 142.252 kb on + strandat 142.254 kb on + strandat 142.254 kb on + strandat 142.254 kb on + strandat 142.254 kb on + strandat 142.254 kb on + strandat 142.254 kb on + strandat 142.254 kb on + strandat 142.254 kb on + strandat 142.260 kb on - strandat 142.262 kb on - strandat 142.262 kb on - strandat 142.262 kb on - strandat 142.262 kb on - strandat 142.270 kb on - strandat 142.297 kb on - strandat 142.314 kb on - strandat 142.336 kb on - strandat 142.341 kb on - strandat 142.342 kb on - strandat 142.343 kb on - strandat 143.639 kb on + strandat 143.646 kb on - strandat 143.646 kb on - strandat 143.687 kb on + strandat 143.689 kb on + strandat 143.701 kb on + strandat 143.702 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.712 kb on + strandat 143.714 kb on + strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.720 kb on - strandat 143.722 kb on - strandat 143.789 kb on - strandat 143.799 kb on + strandat 143.800 kb on + strandat 143.808 kb on - strandat 143.808 kb on - strandat 143.860 kb on + strandat 143.861 kb on + strandat 143.861 kb on + strandat 143.863 kb on - strandat 143.876 kb on - strandat 143.879 kb on + strandat 143.884 kb on + strandat 143.884 kb on + strandat 143.903 kb on + strandat 143.903 kb on + strandat 143.903 kb on + strandat 143.903 kb on + strandat 143.911 kb on - strandat 143.936 kb on + strandat 143.941 kb on + strandat 143.941 kb on + strandat 143.941 kb on + strandat 143.949 kb on - strandat 143.949 kb on - strandat 143.949 kb on - strandat 143.971 kb on + strandat 143.986 kb on - strandat 143.988 kb on + strandat 143.996 kb on + strandat 143.996 kb on - strandat 144.004 kb on - strandat 144.067 kb on + strand, within Dshi_3738at 144.075 kb on - strand, within Dshi_3738at 144.075 kb on - strand, within Dshi_3738at 144.093 kb on - strand, within Dshi_3738at 144.098 kb on - strand, within Dshi_3738at 144.121 kb on + strand, within Dshi_3738at 144.162 kb on - strand, within Dshi_3738at 144.168 kb on - strand, within Dshi_3738at 144.221 kb on - strand, within Dshi_3738at 144.226 kb on + strand, within Dshi_3738at 144.231 kb on - strand, within Dshi_3738at 144.236 kb on - strand, within Dshi_3738at 144.255 kb on + strand, within Dshi_3738at 144.263 kb on - strand, within Dshi_3738at 144.263 kb on - strand, within Dshi_3738at 144.263 kb on - strand, within Dshi_3738at 144.268 kb on - strand, within Dshi_3738at 144.332 kb on + strand, within Dshi_3738at 144.424 kb on - strand, within Dshi_3738at 144.442 kb on - strand, within Dshi_3738at 144.472 kb on + strand, within Dshi_3738at 144.472 kb on + strand, within Dshi_3738at 144.480 kb on - strand, within Dshi_3738at 144.521 kb on - strand, within Dshi_3738at 144.527 kb on + strand, within Dshi_3738at 144.527 kb on + strand, within Dshi_3738at 144.535 kb on - strand, within Dshi_3738at 144.535 kb on - strand, within Dshi_3738at 144.542 kb on + strand, within Dshi_3738at 144.550 kb on - strand, within Dshi_3738at 144.561 kb on + strand, within Dshi_3738

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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142,252 + +0.1
142,252 + +0.5
142,252 + +0.1
142,254 + -0.1
142,254 + -0.3
142,254 + +0.2
142,254 + -0.8
142,254 + +0.0
142,254 + -0.2
142,254 + -0.4
142,254 + +0.3
142,260 - -0.6
142,262 - +0.3
142,262 - +0.1
142,262 - -1.1
142,262 - +0.3
142,270 - +1.4
142,297 - -0.3
142,314 - +0.5
142,336 - -1.0
142,341 - +0.5
142,342 - +0.2
142,343 - -0.6
143,639 + -0.6
143,646 - -0.8
143,646 - -0.0
143,687 + +0.7
143,689 + +0.5
143,701 + -0.4
143,702 + -0.8
143,712 + -0.5
143,712 + -0.1
143,712 + -0.5
143,712 + -1.1
143,712 + +0.0
143,712 + +0.2
143,712 + -0.3
143,712 + +0.8
143,712 + +0.8
143,712 + -0.2
143,712 + +0.1
143,712 + -1.4
143,712 + +1.2
143,712 + -0.9
143,712 + -1.4
143,712 + +0.6
143,712 + +0.8
143,712 + +0.4
143,712 + -0.7
143,712 + +0.2
143,714 + -1.3
143,720 - +0.1
143,720 - +0.4
143,720 - -0.2
143,720 - -1.0
143,720 - -0.3
143,720 - -1.0
143,720 - +0.2
143,720 - -1.0
143,720 - +0.2
143,720 - +0.3
143,720 - -0.4
143,722 - -1.0
143,789 - -0.2
143,799 + +0.0
143,800 + +0.2
143,808 - -0.8
143,808 - -0.6
143,860 + -0.6
143,861 + +0.1
143,861 + +0.1
143,863 - -0.1
143,876 - -0.3
143,879 + +0.5
143,884 + -0.6
143,884 + -0.1
143,903 + +0.0
143,903 + -0.3
143,903 + +0.1
143,903 + -0.2
143,911 - -0.4
143,936 + +1.0
143,941 + +0.5
143,941 + -0.1
143,941 + +0.4
143,949 - +0.6
143,949 - +0.3
143,949 - -0.1
143,971 + -1.2
143,986 - +0.7
143,988 + -1.1
143,996 + +0.6
143,996 - +0.7
144,004 - -0.4
144,067 + Dshi_3738 0.13 +0.0
144,075 - Dshi_3738 0.13 -0.1
144,075 - Dshi_3738 0.13 +0.0
144,093 - Dshi_3738 0.15 -0.3
144,098 - Dshi_3738 0.15 -1.1
144,121 + Dshi_3738 0.17 -0.0
144,162 - Dshi_3738 0.20 -0.1
144,168 - Dshi_3738 0.20 -0.9
144,221 - Dshi_3738 0.24 -0.5
144,226 + Dshi_3738 0.24 -2.0
144,231 - Dshi_3738 0.25 -0.6
144,236 - Dshi_3738 0.25 +1.3
144,255 + Dshi_3738 0.26 -1.5
144,263 - Dshi_3738 0.27 -0.5
144,263 - Dshi_3738 0.27 -0.8
144,263 - Dshi_3738 0.27 +0.5
144,268 - Dshi_3738 0.27 +0.2
144,332 + Dshi_3738 0.32 -0.8
144,424 - Dshi_3738 0.39 +0.1
144,442 - Dshi_3738 0.40 -0.3
144,472 + Dshi_3738 0.42 -0.1
144,472 + Dshi_3738 0.42 -0.2
144,480 - Dshi_3738 0.43 -0.0
144,521 - Dshi_3738 0.46 +0.9
144,527 + Dshi_3738 0.46 -0.1
144,527 + Dshi_3738 0.46 +0.5
144,535 - Dshi_3738 0.47 +0.6
144,535 - Dshi_3738 0.47 +0.9
144,542 + Dshi_3738 0.48 -0.1
144,550 - Dshi_3738 0.48 -1.8
144,561 + Dshi_3738 0.49 +0.2

Or see this region's nucleotide sequence