Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1171

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1169 and Dshi_1170 overlap by 7 nucleotidesDshi_1170 and Dshi_1171 are separated by 171 nucleotidesDshi_1171 and Dshi_1172 are separated by 273 nucleotides Dshi_1169: Dshi_1169 - N-acetylmuramoyl-L-alanine amidase (RefSeq), at 1,199,349 to 1,200,617 _1169 Dshi_1170: Dshi_1170 - Methyltransferase type 11 (RefSeq), at 1,200,611 to 1,201,234 _1170 Dshi_1171: Dshi_1171 - penicillin-binding protein, 1A family (RefSeq), at 1,201,406 to 1,203,928 _1171 Dshi_1172: Dshi_1172 - peptide chain release factor 2 (RefSeq), at 1,204,202 to 1,205,329 _1172 Position (kb) 1201 1202 1203 1204Strain fitness (log2 ratio) -1 0 1at 1200.438 kb on + strand, within Dshi_1169at 1200.645 kb on + strandat 1200.698 kb on - strand, within Dshi_1170at 1200.899 kb on + strand, within Dshi_1170at 1200.907 kb on - strand, within Dshi_1170at 1200.927 kb on + strand, within Dshi_1170at 1201.032 kb on - strand, within Dshi_1170at 1201.235 kb on + strandat 1201.235 kb on + strandat 1201.296 kb on + strandat 1201.304 kb on - strandat 1201.363 kb on - strandat 1201.363 kb on - strandat 1202.168 kb on + strand, within Dshi_1171at 1203.993 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,200,438 + Dshi_1169 0.86 +0.6
1,200,645 + -0.5
1,200,698 - Dshi_1170 0.14 +0.1
1,200,899 + Dshi_1170 0.46 -0.9
1,200,907 - Dshi_1170 0.47 -1.4
1,200,927 + Dshi_1170 0.51 -1.1
1,201,032 - Dshi_1170 0.67 -0.9
1,201,235 + -1.6
1,201,235 + -0.2
1,201,296 + +0.2
1,201,304 - -0.0
1,201,363 - +0.9
1,201,363 - +0.3
1,202,168 + Dshi_1171 0.30 -0.2
1,203,993 + +0.2

Or see this region's nucleotide sequence