Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0779 and Dshi_R0019 are separated by 75 nucleotides Dshi_R0019 and Dshi_0780 are separated by 18 nucleotides Dshi_0780 and Dshi_0781 are separated by 4 nucleotides Dshi_0781 and Dshi_0782 are separated by 73 nucleotides Dshi_0782 and Dshi_0783 are separated by 46 nucleotides
Dshi_0779: Dshi_0779 - transcriptional regulator, MarR family with acetyltransferase activity (RefSeq), at 784,566 to 785,522
_0779
Dshi_R0019: Dshi_R0019 - tRNA-His (RefSeq), at 785,598 to 785,674
_R0019
Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637
_0780
Dshi_0781: Dshi_0781 - Sterol-binding domain protein (RefSeq), at 786,642 to 786,929
_0781
Dshi_0782: Dshi_0782 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 787,003 to 787,569
_0782
Dshi_0783: Dshi_0783 - helicase domain protein (RefSeq), at 787,616 to 790,579
_0783
Position (kb)
785
786
787 Strain fitness (log2 ratio)
-1
0
1
2 at 784.882 kb on - strand, within Dshi_0779 at 785.031 kb on - strand, within Dshi_0779 at 785.234 kb on - strand, within Dshi_0779 at 785.288 kb on - strand, within Dshi_0779 at 785.330 kb on - strand, within Dshi_0779 at 785.477 kb on - strand at 785.891 kb on + strand, within Dshi_0780 at 785.896 kb on + strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.901 kb on + strand, within Dshi_0780 at 785.904 kb on - strand, within Dshi_0780 at 785.909 kb on - strand, within Dshi_0780 at 785.957 kb on - strand, within Dshi_0780 at 785.999 kb on - strand, within Dshi_0780 at 786.014 kb on - strand, within Dshi_0780 at 786.041 kb on - strand at 786.084 kb on - strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.192 kb on + strand, within Dshi_0780 at 786.194 kb on + strand, within Dshi_0780 at 786.198 kb on - strand, within Dshi_0780 at 786.274 kb on + strand, within Dshi_0780 at 786.362 kb on + strand, within Dshi_0780 at 786.370 kb on - strand, within Dshi_0780 at 786.406 kb on - strand, within Dshi_0780 at 786.523 kb on - strand, within Dshi_0780 at 786.600 kb on + strand at 786.621 kb on + strand at 787.008 kb on + strand at 787.018 kb on + strand at 787.026 kb on + strand at 787.081 kb on + strand, within Dshi_0782 at 787.081 kb on + strand, within Dshi_0782 at 787.081 kb on + strand, within Dshi_0782 at 787.175 kb on - strand, within Dshi_0782 at 787.256 kb on - strand, within Dshi_0782 at 787.319 kb on - strand, within Dshi_0782 at 787.319 kb on - strand, within Dshi_0782 at 787.333 kb on + strand, within Dshi_0782 at 787.366 kb on - strand, within Dshi_0782 at 787.385 kb on + strand, within Dshi_0782 at 787.405 kb on - strand, within Dshi_0782 at 787.463 kb on - strand, within Dshi_0782 at 787.563 kb on + strand at 787.576 kb on - strand at 787.604 kb on + strand at 787.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 784,882 - Dshi_0779 0.33 -0.1 785,031 - Dshi_0779 0.49 -0.2 785,234 - Dshi_0779 0.70 -0.4 785,288 - Dshi_0779 0.75 +0.1 785,330 - Dshi_0779 0.80 +0.2 785,477 - +0.2 785,891 + Dshi_0780 0.21 +1.2 785,896 + Dshi_0780 0.21 +0.3 785,899 - Dshi_0780 0.22 +0.1 785,899 - Dshi_0780 0.22 -0.8 785,901 + Dshi_0780 0.22 -0.1 785,904 - Dshi_0780 0.22 +0.2 785,909 - Dshi_0780 0.23 +0.2 785,957 - Dshi_0780 0.28 -0.0 785,999 - Dshi_0780 0.32 -0.1 786,014 - Dshi_0780 0.34 +1.5 786,041 - -1.4 786,084 - Dshi_0780 0.41 +0.6 786,180 + Dshi_0780 0.52 -0.6 786,180 + Dshi_0780 0.52 +0.7 786,192 + Dshi_0780 0.53 -0.4 786,194 + Dshi_0780 0.53 +0.3 786,198 - Dshi_0780 0.53 +0.4 786,274 + Dshi_0780 0.61 -0.1 786,362 + Dshi_0780 0.71 -1.0 786,370 - Dshi_0780 0.72 +0.1 786,406 - Dshi_0780 0.75 +2.4 786,523 - Dshi_0780 0.88 +0.4 786,600 + -1.0 786,621 + -0.9 787,008 + +0.0 787,018 + -0.7 787,026 + -0.7 787,081 + Dshi_0782 0.14 -0.3 787,081 + Dshi_0782 0.14 +0.1 787,081 + Dshi_0782 0.14 +0.1 787,175 - Dshi_0782 0.30 -0.5 787,256 - Dshi_0782 0.45 -0.5 787,319 - Dshi_0782 0.56 +0.9 787,319 - Dshi_0782 0.56 -0.0 787,333 + Dshi_0782 0.58 -0.5 787,366 - Dshi_0782 0.64 -1.1 787,385 + Dshi_0782 0.67 -0.3 787,405 - Dshi_0782 0.71 -0.3 787,463 - Dshi_0782 0.81 +0.0 787,563 + +0.2 787,576 - -0.1 787,604 + +0.4 787,606 + -0.5
Or see this region's nucleotide sequence