Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0205

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0204 and Dshi_0205 are separated by 275 nucleotidesDshi_0205 and Dshi_0206 overlap by 8 nucleotidesDshi_0206 and Dshi_0207 are separated by 80 nucleotides Dshi_0204: Dshi_0204 - acyl-CoA dehydrogenase domain protein (RefSeq), at 201,901 to 203,595 _0204 Dshi_0205: Dshi_0205 - protein of unknown function DUF81 (RefSeq), at 203,871 to 204,635 _0205 Dshi_0206: Dshi_0206 - hypothetical protein (RefSeq), at 204,628 to 205,515 _0206 Dshi_0207: Dshi_0207 - Phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 205,596 to 205,865 _0207 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1at 202.871 kb on + strand, within Dshi_0204at 202.871 kb on + strand, within Dshi_0204at 202.879 kb on - strand, within Dshi_0204at 202.896 kb on + strand, within Dshi_0204at 203.144 kb on + strand, within Dshi_0204at 203.260 kb on - strand, within Dshi_0204at 203.735 kb on - strandat 203.991 kb on - strand, within Dshi_0205at 204.028 kb on + strand, within Dshi_0205at 204.160 kb on + strand, within Dshi_0205at 204.383 kb on + strand, within Dshi_0205at 204.480 kb on - strand, within Dshi_0205at 204.603 kb on + strandat 204.754 kb on + strand, within Dshi_0206at 204.762 kb on - strand, within Dshi_0206at 204.882 kb on + strand, within Dshi_0206at 204.999 kb on + strand, within Dshi_0206at 205.048 kb on + strand, within Dshi_0206at 205.099 kb on - strand, within Dshi_0206at 205.141 kb on + strand, within Dshi_0206at 205.296 kb on - strand, within Dshi_0206at 205.348 kb on - strand, within Dshi_0206at 205.353 kb on - strand, within Dshi_0206at 205.370 kb on + strand, within Dshi_0206at 205.430 kb on - strandat 205.457 kb on + strandat 205.483 kb on - strandat 205.552 kb on + strandat 205.555 kb on - strandat 205.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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202,871 + Dshi_0204 0.57 +0.3
202,871 + Dshi_0204 0.57 +0.2
202,879 - Dshi_0204 0.58 -0.6
202,896 + Dshi_0204 0.59 +0.5
203,144 + Dshi_0204 0.73 -0.4
203,260 - Dshi_0204 0.80 +0.4
203,735 - +1.1
203,991 - Dshi_0205 0.16 -0.4
204,028 + Dshi_0205 0.21 +0.4
204,160 + Dshi_0205 0.38 +1.4
204,383 + Dshi_0205 0.67 +0.1
204,480 - Dshi_0205 0.80 -2.3
204,603 + -0.1
204,754 + Dshi_0206 0.14 -0.1
204,762 - Dshi_0206 0.15 -0.3
204,882 + Dshi_0206 0.29 -0.3
204,999 + Dshi_0206 0.42 +0.2
205,048 + Dshi_0206 0.47 -0.2
205,099 - Dshi_0206 0.53 -0.1
205,141 + Dshi_0206 0.58 -0.5
205,296 - Dshi_0206 0.75 +0.6
205,348 - Dshi_0206 0.81 +0.7
205,353 - Dshi_0206 0.82 +1.1
205,370 + Dshi_0206 0.84 -0.8
205,430 - -0.7
205,457 + -0.3
205,483 - -0.0
205,552 + +0.4
205,555 - -1.5
205,589 - +0.8

Or see this region's nucleotide sequence